Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000646-TA|BGIBMGA000646-PA|IPR006751|TAFII55 protein
conserved region
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 49 7e-06
01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160 44 3e-04
10_02_0125 - 5537541-5538758 32 0.68
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 32 0.89
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 32 0.89
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549... 31 2.1
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 30 2.7
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 30 3.6
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 30 3.6
08_02_1198 + 25204896-25206755 29 6.3
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628... 29 6.3
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 6.3
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 29 6.3
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 29 6.3
05_01_0372 - 2913518-2916562,2916674-2917528 29 6.3
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 29 6.3
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 29 6.3
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 6.3
06_01_1018 - 7964752-7964847,7964976-7967048 29 8.3
04_04_0199 - 23519597-23520282,23520913-23521471 29 8.3
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 8.3
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 48.8 bits (111), Expect = 7e-06
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 14 LESQFILKLPEHPAKILRELLK------SGENLKNR-LTIQIDNDMRRGEVRLDHWLMHA 66
+E QFIL++P A+ + L+ S N ++ L + D R G + + A
Sbjct: 1 MEEQFILRVPPSVAERIERLMNESAAASSSSNPEDASLDLSFSEDGRNGTFMIGNESFPA 60
Query: 67 KIIDLPTIVESLKTIDGKSFYKTADICQ 94
++DLPT+VES KT D KTADI Q
Sbjct: 61 SLLDLPTVVESYKTYDDSVLIKTADIGQ 88
>01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160
Length = 146
Score = 43.6 bits (98), Expect = 3e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 44 LTIQIDNDMRRGEVRLDHWLMHAKIIDLPTIVESLKTIDGKSFYKTADICQMMICKDGPD 103
L + D R G + + A ++DLPT++ES KT + KTADI QM++ ++ D
Sbjct: 17 LDLSFSEDGRSGTFMIGNESFPASLLDLPTVMESYKTYNDSVLIKTADIGQMIMVRE-ED 75
Query: 104 QPIAE 108
P E
Sbjct: 76 DPAPE 80
>10_02_0125 - 5537541-5538758
Length = 405
Score = 32.3 bits (70), Expect = 0.68
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 241 DETVNVDLQNSRLSVCDSR--LSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTS 298
++++NV QN LS DS +G+S N + +++K PI S +S S+
Sbjct: 288 NDSINVGTQNDNLSNFDSEKDSNGDSNNGTTDANVSKDFQPPIPTPSQNDRSQTDNSAKK 347
Query: 299 DAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISGIENLALR 353
C + ++ G FS D L+ +RRQ +L ++G + +R
Sbjct: 348 TLIC-YNCKEPGHFSR---DCPQPKRNLRHHSGHYARRRQVTRLVVTGANAIPVR 398
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 31.9 bits (69), Expect = 0.89
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 273 LTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDE 332
+T S E S + S + +S +DA SS+ G EK ++ I L+ V E
Sbjct: 556 VTSDSIAQKEVISRLISSIEEISDAADASTTGSSQPSGVHFREK-ELQSYIANLQQSVTE 614
Query: 333 LKQRRQKIKLEISGIE 348
L + Q++KL+ + +E
Sbjct: 615 LAEEVQRLKLKNTQLE 630
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 31.9 bits (69), Expect = 0.89
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 215 TLHATKPESSNIVDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSL---GE 271
+L P+ +DI G VS + DE VN D S +S +S ++S +
Sbjct: 372 SLKMDDPDIFERIDIGGSPVSAA--RDEKVNNDSDGKAGSSSESGSGSDSDSESSDSGSD 429
Query: 272 SLTKSSALPIEFGSHMFQSSQGVSST---SDAKCDLSSEDDGEFSNEKDDMALRINQLKL 328
S ++S + GS S SS+ SDA D++S+DD ++ K L+++ L
Sbjct: 430 SGSQSRSAASGSGSSSDSDSDASSSSKEGSDAFVDITSDDDKGGAHRKAADELKLSSLPR 489
Query: 329 EVDEL 333
++ L
Sbjct: 490 DLTAL 494
>09_04_0613 +
18953761-18953932,18954672-18954799,18954885-18954956,
18955033-18955146,18955547-18955615,18955691-18955747,
18956262-18956315,18956387-18956449,18956543-18956605,
18956803-18956967,18957111-18957266,18957315-18957416
Length = 404
Score = 30.7 bits (66), Expect = 2.1
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 257 DSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEK 316
D+ L + ++ + +AL E G + S SS + +L S+DDG EK
Sbjct: 21 DAGLGDVAAEETTAARAKEEAALAAELGQLRAKISALESSITKQTQELKSKDDGIQKLEK 80
Query: 317 --DDMALRINQLKLEVDELKQRRQKIKLEISGIENLALRQRFQDNLHTLNQDI 367
++ + +I L+ E+ L+ +R E +G N A + + L +DI
Sbjct: 81 LIEEKSKKIATLQSEITSLETKRSLAAEEQAGKAN-ARAIELEKQIEKLKKDI 132
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 289 QSSQGVSSTSDAKCDLSSEDDGEFSNEKD---DMALRINQLKLEVDELKQRRQKIKLEIS 345
QS Q + S SED G+ S+ D D + L+ E E +RRQK++ +++
Sbjct: 350 QSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLA 409
Query: 346 GIENLA 351
+A
Sbjct: 410 DATRIA 415
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 29.9 bits (64), Expect = 3.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 254 SVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSS 291
SV R S ++ SLG+S T SSA P FG F+++
Sbjct: 582 SVRTLRASNSNKASSLGQSNTSSSADPFAFGQDSFKAA 619
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 311 EFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISGIE 348
+ + + + +I +LK E DEL+ +QK+K+E +E
Sbjct: 139 QLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLE 176
>08_02_1198 + 25204896-25206755
Length = 619
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 291 SQGVSSTSDAKCD----LSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISG 346
++ + TSD + D L+ D + + +++A R+ + K+++ +K+R+QK+ L+ +
Sbjct: 8 TEDLGDTSDFEVDGVENLTENDVSDEEIDAEELARRMWKDKIKLKRIKERQQKLALQQAA 67
Query: 347 IE 348
+E
Sbjct: 68 LE 69
>06_03_0086 +
16458881-16458952,16461795-16461966,16462621-16462889,
16463045-16463316,16463409-16463533,16463852-16463964,
16464579-16464692
Length = 378
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 7 ELEYPAELESQFILKLPEHPAKILRELLKSGENLKNRLTIQIDND 51
ELE E ++ ++ P HPA I E +K +NL+ LT + +D
Sbjct: 82 ELEKHIE-DAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSD 125
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 29.1 bits (62), Expect = 6.3
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 230 FGGGVSDSDFEDETVNVDLQNSRLSV-----CDSRLSGNSTNQSL---GESLTKSSALPI 281
FG S+S+ ED+ + + S V D SG S + E L K +
Sbjct: 219 FGEDCSESEEEDDHAESEDEGSVSEVEDEGDDDEEKSGESDDDDAIKSVEDLKKLVPCTL 278
Query: 282 EFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDD 318
E + S+QG SSTS++ S +DG+ +K D
Sbjct: 279 EEFAKRVASAQGSSSTSESSDTAESPEDGKRPLQKGD 315
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/100 (21%), Positives = 44/100 (44%)
Query: 218 ATKPESSNIVDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSS 277
A+ E +V GGG S D + + L++ RL + + + ++LG+S+ +++
Sbjct: 36 ASAEEGCGLVGRGGGGGSGGDDGEGGCYLRLRSRRLPFVAAAVVSSRREEALGDSVAEAA 95
Query: 278 ALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKD 317
+ + S + ++ C + ED E S+ D
Sbjct: 96 SSSSSRAVELLGCSGEEEAMAEKVCTQAGEDHDEESSVGD 135
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 29.1 bits (62), Expect = 6.3
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 285 SHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEI 344
S M S VSSTS+ + + G+ S + D MA + L + K ++ + EI
Sbjct: 547 SSMASSISSVSSTSNGSEHAVAAEGGDLSADADSMACHQSDLPSNIAGSKMVSKRPRSEI 606
Query: 345 SGIENLALRQRFQDN 359
+ + A ++ +N
Sbjct: 607 PEVSSRAGKESVDNN 621
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 233 GVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQ 292
G +++D +++ V+ D +R+++ +S + + LGE S + S + +S
Sbjct: 420 GTNEADDDEDGVSSDRGPARVAIIESSEAAKQIMKELGEGSASVSPVSGLSSSREYTNSM 479
Query: 293 GVSSTSDAKCDLSSEDDGEFSNEK 316
D + +DD E +EK
Sbjct: 480 DGQIVLDDSEEDGDDDDNEDDDEK 503
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 243 TVNVDLQNSRLSVCDSRLSGNSTNQSLGES-LTKSSALPIEFGSHMFQSSQGVSS 296
T D N +++VC S L LG + L +S LP++ G+++ ++ GVSS
Sbjct: 1556 TCTSDHLNKKVAVC-SNLGMEINRNELGYTHLLLASRLPLDVGAYLERTCNGVSS 1609
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 29.1 bits (62), Expect = 6.3
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 233 GVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFG-SHMFQSS 291
G ++S ED+ + D + R + DS S + LG+S + E G
Sbjct: 367 GTAESSDEDD--DDDEEGDRSTKLDS--SKPISGDDLGDSFSTDEPARKEKGWVDEIYER 422
Query: 292 QGVSSTSDAKCDLSSEDDGEFSNEKDDM-ALRINQLKLEVDELKQRRQKIKLE 343
+G DA+ D DD E + E+D+M L+ + K+ +K+ Q K E
Sbjct: 423 EGKKIGEDAEGDWEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKE 475
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 305 SSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISGIENLALRQRFQDNLHTLN 364
SS D E E D+ ++ LK+E+ +L + ++ +L +E + QDN H L+
Sbjct: 619 SSALDNELE-EGIDLQDQVTWLKVELCKLLEEKRSAELRSEELETALMEMVKQDNRHMLS 677
Query: 365 QDIMYKEMEYQ 375
++ + + Q
Sbjct: 678 AKVLIRMEQEQ 688
>06_01_1018 - 7964752-7964847,7964976-7967048
Length = 722
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 223 SSNIVDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLT--KSSALP 280
++ V + G G++ + ++ L + L + +S +GN++N+ L ++
Sbjct: 112 AAEYVTVSGNGLAFFVAPSKNLSAALPSQFLGLFNSENNGNASNRVFAVELDTIRNQEFG 171
Query: 281 IEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSN 314
G+H+ G++S + ++D GEF N
Sbjct: 172 DINGNHVGVDVNGLASVASMPAGYYADDTGEFEN 205
>04_04_0199 - 23519597-23520282,23520913-23521471
Length = 414
Score = 28.7 bits (61), Expect = 8.3
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 285 SHMFQSSQGVSSTSDAKCDLSSE----DDGEFSNEKDDMALRINQLKLEVDELKQRRQKI 340
SH+ Q + S+T K + S+ DG + A I+QL+ ++D +Q ++KI
Sbjct: 229 SHLEQKLEEASNTIREKNSVLSQLQELIDGMHIATPAERAFDIDQLETDLD--RQLQEKI 286
Query: 341 KLEISGIENLALRQRFQ 357
+ EI + L RQ +Q
Sbjct: 287 EAEIQSLVMLKARQSWQ 303
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 28.7 bits (61), Expect = 8.3
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 263 NSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALR 322
NS + L +S+ ++ A + S + Q + D C E+ +EK+D+ LR
Sbjct: 214 NSLIKQLEDSIEQNKARLLYVDSRLECMEQELKLKEDV-CICLKENLASTESEKNDLKLR 272
Query: 323 INQLKLEVDELKQRRQKIKLEISG 346
LEV +L + +++ +SG
Sbjct: 273 NEGYTLEVQKLSKDNKELNELLSG 296
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,819,087
Number of Sequences: 37544
Number of extensions: 368113
Number of successful extensions: 869
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 22
length of query: 386
length of database: 14,793,348
effective HSP length: 83
effective length of query: 303
effective length of database: 11,677,196
effective search space: 3538190388
effective search space used: 3538190388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -