GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000646-TA|BGIBMGA000646-PA|IPR006751|TAFII55 protein
conserved region
         (386 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    26   2.0  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    25   2.7  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 225 NIVDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESL 273
           N    FGG  S ++ E+ T N+D+Q    +     L+    +  L E L
Sbjct: 757 NYTSYFGGSPSFTNLENSTRNLDMQELDYNPSKKDLTDAKIHHLLSEEL 805


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 270 GESLTKSSALPI-EFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKL 328
           G+ L + +  P+ E GS      + +    + + +   E+  E  +E+ + +  + + +L
Sbjct: 58  GDELPEDAPEPVPEDGS---PDEEHLEEEQEEEAEADEEEADESESEESEESDELEEARL 114

Query: 329 EVDELKQRRQKI 340
             +EL++R+Q++
Sbjct: 115 VAEELEERQQEL 126


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,326
Number of Sequences: 2123
Number of extensions: 12218
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 516,269
effective HSP length: 65
effective length of query: 321
effective length of database: 378,274
effective search space: 121425954
effective search space used: 121425954
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)