Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000645-TA|BGIBMGA000645-PA|IPR001828|Extracellular
ligand-binding receptor, IPR001320|Ionotropic glutamate receptor,
IPR001508|NMDA receptor
         (733 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...   138   2e-34
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   2.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   2.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score =  138 bits (333), Expect = 2e-34
 Identities = 107/365 (29%), Positives = 163/365 (44%), Gaps = 48/365 (13%)

Query: 173 DCNPKGKITPYEHGDKISRMIKKTELDGLTGSLRFNEEGHRRNFTLQIMELTVDGEMVKI 232
           +C   G I  +E G  +   I+K  L G TG + F++ G R      I+ +  +G+ V +
Sbjct: 317 NCADSGSI--WETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAEYDIINIQENGDQVSV 374

Query: 233 ATWYDNRGXXXXXXXXXXXXXX--GTYDRNK------TYI-VSTIEEPPYV-MRHKAGGP 282
             ++   G                G            T++ V TIEE P+V +R  A   
Sbjct: 375 GRYFYPNGTEKMTLSVNESNITWPGRLQTKPEGFMIPTHLKVLTIEEKPFVYVREIAFSE 434

Query: 283 ESTPND---PY--------------RGFCVDLAKMLSDKLEIKYDLRLVKDGKYGNDNPK 325
              P +   P+              +G+C+DL K LS  +   Y L L  DG++GN   K
Sbjct: 435 SCLPEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKTINFTYSLALSPDGQFGNYIIK 494

Query: 326 --IVGG---WDGMVGELVRKEVDMAIAPLTITLERETVIDFSKPFLSFDVKTKKNSFKDP 380
              VGG   W G++GELV +  DM +APLTI  ER   I+FSKPF    +   +      
Sbjct: 495 NNSVGGKKEWTGLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRS 554

Query: 381 TTIFSFLHPLSKEIWLCIIXXXXXXXXXXXXXXXXXPHEWRLISFTDSQTSDHSEVATTK 440
           +T+ SFL P S  +W+ ++                 P                 ++A T 
Sbjct: 555 STLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPF-------------GRFKLANTD 601

Query: 441 TTAVNEFTFWNSMWFSLGSFMQQG-SDITPRSISGRIVGSVWWFFALIVISSYTANLASY 499
            T  +     +++WF+ G  +  G  + TPRS S R++G VW  FA+I+++SYTANLA++
Sbjct: 602 GTEEDALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 661

Query: 500 LTLTR 504
           L L R
Sbjct: 662 LVLER 666



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 543 FIFDPAGSNSENDKKPCEMLVTVASTGVQDFAVAMPKGSKLRDGINLALQSLKNDGELQK 602
           FI+D +    E   + CE++      G   + + + KGS   D + LA+      G ++ 
Sbjct: 736 FIWDSSRLEFEA-AQDCELVTAGELFGRSGYGIGLQKGSLWADAVTLAILDFHESGFMES 794

Query: 603 LIRKWFTKAECEANQDVQGSELTLG 627
           L   W  ++  +  + ++ +  TLG
Sbjct: 795 LDNHWILRSNVQQCEQLEKAPNTLG 819


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 505 ISEPSQSYNKLATCPEDTAGNLGNSMFQEGGEGNGWLNFIFDPAGSNSENDKKPCEMLVT 564
           + E   S N L + PE+++G +    F +        +  +   GS+S +   P     +
Sbjct: 43  VHEEESSLNDLFSGPEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSS 102

Query: 565 VASTGV 570
           V+ T +
Sbjct: 103 VSPTSL 108


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 450 WNSMWFSLGSFMQQGSDITPRSISGRIVGSVWWFFALIVISSYTANLASYLTLTRISE 507
           W S   +  +F     +IT  S+ G I+  ++WF  +++I +YT+ L      ++ SE
Sbjct: 185 WYSQCVTFNAFPTYTHEIT-YSLFGMIM--MYWFPLVVIIYTYTSILLEIRRRSKKSE 239


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 435 EVATTKTTAVNEFTFWNSMWFSLGSFMQQGSDITPR 470
           E+A  K T   +    N+ W      + +G D TPR
Sbjct: 433 EIADIKLTTNQQRNILNTFWTKSDVDLSRGLDFTPR 468


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,586
Number of Sequences: 429
Number of extensions: 7526
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 733
length of database: 140,377
effective HSP length: 63
effective length of query: 670
effective length of database: 113,350
effective search space: 75944500
effective search space used: 75944500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)