GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000645-TA|BGIBMGA000645-PA|IPR001828|Extracellular
ligand-binding receptor, IPR001320|Ionotropic glutamate receptor,
IPR001508|NMDA receptor
         (733 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   5.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   5.6  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   7.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   7.5  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 377 FKDPTTIFSFLHPL 390
           FKDP  +++ +HPL
Sbjct: 10  FKDPCDVYTAIHPL 23


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 377 FKDPTTIFSFLHPL 390
           FKDP  +++ +HPL
Sbjct: 10  FKDPCDVYTAIHPL 23


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 433 HSEVATTKTTAVNEFTFWNSMWFSL 457
           HS + TT     + F+ +  +W SL
Sbjct: 224 HSNLVTTSEEVCDSFSIFGLVWISL 248


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 433 HSEVATTKTTAVNEFTFWNSMWFSL 457
           HS + TT     + F+ +  +W SL
Sbjct: 224 HSNLVTTSEEVCDSFSIFGLVWISL 248


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,638
Number of Sequences: 317
Number of extensions: 5954
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 733
length of database: 114,650
effective HSP length: 62
effective length of query: 671
effective length of database: 94,996
effective search space: 63742316
effective search space used: 63742316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)