GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000645-TA|BGIBMGA000645-PA|IPR001828|Extracellular
ligand-binding receptor, IPR001320|Ionotropic glutamate receptor,
IPR001508|NMDA receptor
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   2.3  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    29   2.3  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   5.3  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 157 RGTIRRNANVNTSRIIDCNPKGKITPYEHGDKISR 191
           +G   ++A+ +   II  N K K+ PY+H +K+S+
Sbjct: 757 KGIWSKDASKHHREIISLNVKQKMDPYKHQNKVSK 791


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 449 FWNSMWFSLGSFMQQGSDITPRSISGRIVGSVWWFF 484
           FW S+ +   ++ Q+ + I  + IS  IV ++WW F
Sbjct: 70  FWTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMF 105


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 332 GMVGELVRKEVDMAIAPLTITLERETVIDFSKP 364
           G++ E   + +D+A+  L I L   ++I F+KP
Sbjct: 337 GLIPEFTNRRMDIALVGLAINLTSGSLIAFAKP 369


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,386
Number of Sequences: 5004
Number of extensions: 119142
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 3
length of query: 733
length of database: 2,362,478
effective HSP length: 78
effective length of query: 655
effective length of database: 1,972,166
effective search space: 1291768730
effective search space used: 1291768730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)