GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000645-TA|BGIBMGA000645-PA|IPR001828|Extracellular
ligand-binding receptor, IPR001320|Ionotropic glutamate receptor,
IPR001508|NMDA receptor
         (733 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   9.4  

>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 92  REVTEFGAINITGFRVLDFSRKVVRDFIDVWKKNSISAQAALMYDAVQVLVDAIVRLLRK 151
           R VTE   + ITG  +L     V R      ++ +++A  +L ++       A VRL R+
Sbjct: 201 RIVTEMAEVLITGIDMLAKKEDVERGLQRALERTAVAATTSL-WERRDGTQRARVRLPRR 259

Query: 152 KPDIL 156
             D+L
Sbjct: 260 DTDLL 264


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,085
Number of Sequences: 2123
Number of extensions: 26270
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 1
length of query: 733
length of database: 516,269
effective HSP length: 69
effective length of query: 664
effective length of database: 369,782
effective search space: 245535248
effective search space used: 245535248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)