Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   0.26 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   2.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   3.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   4.3  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    24   4.3  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        23   5.6  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    23   5.6  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   7.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    23   7.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    23   7.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    23   9.8  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    23   9.8  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    23   9.8  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 10 SGLIDYAVSMRPDYHRAVIDTITF 33
          S  +DYAV   PD+H   ID +++
Sbjct: 23 SNFLDYAVDKYPDFHFTCIDKLSY 46


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 31  ITFYGWKNVIYVYDSHDEKYVTQWLLISFASE-AVPQY-NFAE-DDRCSETAAVSIKT 85
           I  + +++ I +  S+DEK   QW ++SF  + A+ +Y +F++   R S T    +K+
Sbjct: 598 IVRFSFEHSILINTSNDEKETAQW-IVSFTGDIALSRYKHFSKFSARASTTEIGHVKS 654


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 37  KNVIYVYDSHDEKYVTQWLLISFASE 62
           KNV+Y+     +  V Q++LI+F ++
Sbjct: 683 KNVMYIVTHETDWKVVQYILINFTNQ 708


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)

Query: 65  PQYNFAEDDRCSETAAVSIKTFKGH 89
           P   F  D  CS    VS  TFKGH
Sbjct: 131 PSILFPTDVPCSLDDDVSFLTFKGH 155


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 33  FYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNF 69
           +YG   V++++ + +E +     L+SF     P+  +
Sbjct: 153 YYGNNKVLFIFCAANEMFFVALYLLSFTPRTPPKLGY 189


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 30  TITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFKGH 89
           T  F G+   I  Y++H    +   +++       P Y++  D + +E A+ S    +G+
Sbjct: 122 TDKFNGYGIFIDTYNNHRPGTLFPRVIVMKGDGHTP-YDYENDGKANEIASCSALNVRGN 180

Query: 90  D 90
           D
Sbjct: 181 D 181


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 26  AVIDTITFYGWKNVIYVYDSHDEKYVTQW 54
           AVI T+  +G KN+I+V     E+ +T++
Sbjct: 122 AVITTLQEWGCKNIIFVSVLASEQALTRF 150


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 45  SHDEKYVTQWLLISFASEAVPQYNFAEDDR 74
           SHDE+   Q L     S++V   N AE+ R
Sbjct: 590 SHDERSYIQQLQSQIKSQSVHHENAAEEIR 619


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 12  LIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEK 49
           LI+   SM PD   A   T      ++++YV    D K
Sbjct: 901 LINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHK 938


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 23  YHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
           YH+   + ++     NV   +D  D  Y T WL I +AS+
Sbjct: 378 YHQCRWNYVSEEDVLNVDAKFDEVDMPYDTIWLDIEYASK 417


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 37  KNVIYVYDSHDEKYVTQWLLISFASEAV 64
           K+ I VY+S   +Y+     + FAS+ V
Sbjct: 368 KHQIEVYESDVSEYIANEFSMDFASDTV 395


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 14  DYAVSMRPDYHRAVIDTITFYGWK-NVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAED 72
           +Y    +P Y    I+    YG   + +   DS +      W LI  + EA P Y +  D
Sbjct: 179 EYVKEKKPSYDICTINPPYVYGPPIHPMKNMDSLNTSNQIFWKLIDGSKEATPFYYYYVD 238

Query: 73  DR 74
            R
Sbjct: 239 VR 240


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 268

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 12 LIDYAVSMRPDYHRAVIDTITFYGW 36
          LI   +    D+++   D IT Y W
Sbjct: 25 LIKPCIKSEVDFYKTCNDNITLYNW 49


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,226
Number of Sequences: 5004
Number of extensions: 15358
Number of successful extensions: 49
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 13
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)