Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
         (93 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)           27   2.1  
SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)               27   2.1  
SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)                       26   3.7  
SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)                       26   3.7  
SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)               26   3.7  
SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           25   6.4  
SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           25   6.4  
SB_27613| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 25   8.4  
SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                25   8.4  

>SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)
          Length = 354

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 1   MFIQVIPPSSGLIDYAVSMRPDYHRAV---IDTITFYGWKNVIYVYDSHDEKYVTQWLLI 57
           +   VI  SSG   +    + DY  ++     T+T  G+ + + + DS DE+Y  +++ I
Sbjct: 202 LLAMVITVSSGAFIFTHYEKWDYFHSLYYCFITVTTIGFGDYVALQDSKDERYSNKYVGI 261

Query: 58  S 58
           S
Sbjct: 262 S 262


>SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)
          Length = 604

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 19  MRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRC 75
           MRP+Y + +++ +    WK   +V   HDE  V + + +       P     +D RC
Sbjct: 75  MRPNYCKDILECLCHGKWKKKSWVTLQHDEDRVKKDMALR-EFRGAPVKLSRDDGRC 130


>SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 26  AVIDTITFYGWKNVIYVYD 44
           A++  I  YGWK++I +YD
Sbjct: 231 AIVAIIQKYGWKSLIVLYD 249


>SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 26  AVIDTITFYGWKNVIYVYD 44
           A++  I  YGWK++I +YD
Sbjct: 231 AIVAIIQKYGWKSLIVLYD 249


>SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)
          Length = 422

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 23  YHRAVIDTITFYGWKNVIYVYDSHDEKYV 51
           +H+  ++ + F GWKN   + + HD + +
Sbjct: 381 HHKKFVNGLKFNGWKNERVLQEFHDGRII 409


>SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 3   IQVIPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEK 49
           I+V+P ++      +++  D  +     I ++ ++   YVYDS ++K
Sbjct: 97  IKVVPTANNGSAELINLHHDKDKQTGKEIIWFNFQKAKYVYDSEEKK 143


>SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 3   IQVIPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEK 49
           I+V+P ++      +++  D  +     I ++ ++   YVYDS ++K
Sbjct: 97  IKVVPTANNGSAELINLHHDKDKQTGKEIIWFNFQKAKYVYDSEEKK 143


>SB_27613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 48  EKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIK 84
           E Y+ +   +S+  + +   N AE DR  ET A S++
Sbjct: 212 ETYMEKHRNLSYMEQLLDDVNRAEQDRFEETEAKSLQ 248


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 35  GWKNVIYVYDSHDEKYVTQWLLISFASEAV-PQYNFAEDDRCSETA 79
           GW +V Y + +    +   W+L+++ + +  P  +  E +   ETA
Sbjct: 179 GWASVFYCFGAFGVLWYIMWVLLAYETPSFHPSISDEEREFIEETA 224


>SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 431

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 20 RPDYHRAVIDTITFYGWKNVIYVYDSH 46
          RP Y  AV+  +  YG +N + VY+ H
Sbjct: 42 RPVYRSAVVAGVYGYGAQNHLTVYNLH 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,421
Number of Sequences: 59808
Number of extensions: 103325
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 10
length of query: 93
length of database: 16,821,457
effective HSP length: 70
effective length of query: 23
effective length of database: 12,634,897
effective search space: 290602631
effective search space used: 290602631
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)