GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
         (93 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   1.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    20   4.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   8.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 27  VIDTITFYGWKNVIYVYDSHDEKY--VTQW 54
           ++D   F  W+  + ++ +H+  Y  VT W
Sbjct: 647 ILDKFFFPRWRQTLAMWLNHNPNYAEVTDW 676


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 6   IPPSSGLIDYAVSMRPDYHRA 26
           IP  + ++D+   M  DYH A
Sbjct: 187 IPEINKVVDFINIMSYDYHTA 207


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 44  DSHDEKY 50
           D HDEKY
Sbjct: 198 DDHDEKY 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,939
Number of Sequences: 317
Number of extensions: 849
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 114,650
effective HSP length: 48
effective length of query: 45
effective length of database: 99,434
effective search space:  4474530
effective search space used:  4474530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)