GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
         (93 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    27   1.5  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    27   2.0  
02_01_0002 - 9542-9762,11085-11196,11328-12575                         26   4.6  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    26   4.6  
11_04_0161 - 14270233-14271747                                         25   6.1  
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268...    25   6.1  
01_01_0925 - 7306881-7308486,7308797-7308906                           25   6.1  

>05_07_0342 +
          29402867-29402906,29403012-29403052,29403146-29403220,
          29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 7  PPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLIS 58
          P    L+D  +S+  +  R ++ T+  +     I + +SH+  Y T+++L++
Sbjct: 6  PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTRYVLVN 57


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 26  AVIDTITFYGWKNVIYVYDSHD 47
           AV D + +YGWK V  ++  +D
Sbjct: 152 AVADLVEYYGWKQVTTIFVDND 173


>02_01_0002 - 9542-9762,11085-11196,11328-12575
          Length = 526

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 21  PDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQ 53
           PDY R   D +     ++ +Y  DS DE+++TQ
Sbjct: 303 PDYIRMADDEVGRALSRDSVYDLDSEDEQWLTQ 335


>01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,
            3345039-3345101,3345582-3345769,3345846-3346029,
            3346535-3346606,3346676-3346787,3346878-3346953,
            3347050-3347100,3347179-3347260,3347331-3347567,
            3347650-3347772,3348141-3348326,3348680-3349625,
            3350426-3350551,3350683-3350811,3350918-3351049,
            3351167-3351301,3351450-3351575,3352080-3352148,
            3352149-3352205,3352302-3352436,3352600-3352704,
            3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 53   QWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
            QWL ++  S+ +    + E D C    + S KT  G D+ F
Sbjct: 1273 QWLFLTDGSKFISGEKYEEQDDCLLAVSFSSKT-TGEDSAF 1312


>11_04_0161 - 14270233-14271747
          Length = 504

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 5   VIPPSSGLI-DYAVSMRPDYHRAVIDTITFYGWKNVI 40
           ++PP+ G++ ++    R   HRAV   +T  GW + +
Sbjct: 347 LLPPAGGMVVEWCSQARVLAHRAVGCFVTHCGWNSTL 383


>01_06_1821 +
           40126389-40126508,40126589-40126646,40126782-40126837,
           40127076-40127176,40127336-40127405,40127501-40127570,
           40127970-40128026,40128110-40128177,40128258-40128338,
           40128474-40128551,40128644-40128799,40128874-40128933,
           40129253-40129317,40130002-40130059
          Length = 365

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 34  YGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNF 69
           Y ++NV+ V   +       WL   F+ +  P Y F
Sbjct: 137 YSYRNVLPVVSDNYHAIAFDWLGFGFSDKPQPDYGF 172


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   IPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLL 56
           +P   G++ +    RP +HR  +  +  +    ++Y   SHD   V  W L
Sbjct: 241 LPAKGGILSFT-KRRPPHHRDTVSCLVLHAVAGLLYT-ASHDHT-VKAWKL 288


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,039
Number of Sequences: 37544
Number of extensions: 87530
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 14,793,348
effective HSP length: 70
effective length of query: 23
effective length of database: 12,165,268
effective search space: 279801164
effective search space used: 279801164
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)