Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
(93 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 36 0.003
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 36 0.003
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 36 0.003
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 29 0.60
U39854-3|AAA81078.2| 263|Caenorhabditis elegans Hypothetical pr... 28 1.1
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 27 2.4
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 27 2.4
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 27 2.4
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 26 4.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 26 4.3
Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 25 7.4
U64852-6|AAB04969.1| 359|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical ... 25 7.4
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 25 7.4
AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical ... 25 7.4
U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 25 9.8
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 25 9.8
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 25 9.8
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 18 SMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSE 77
S+ P + +ID I + GW++V+Y++D + T + S+ E P+Y D+ +
Sbjct: 143 SVAPSAEQLLIDYIQYKGWRDVVYIHDGKNADR-TLRTMFSYLHEKSPKYQLFVDNYVAP 201
Query: 78 TAAVSIKTF 86
+ K F
Sbjct: 202 SDEEMFKEF 210
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 18 SMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSE 77
S+ P + +ID I + GW++V+Y++D + T + S+ E P+Y D+ +
Sbjct: 143 SVAPSAEQLLIDYIQYKGWRDVVYIHDGKNADR-TLRTMFSYLHEKSPKYQLFVDNYVAP 201
Query: 78 TAAVSIKTF 86
+ K F
Sbjct: 202 SDEEMFKEF 210
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 18 SMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSE 77
S+ P + +ID I + GW++V+Y++D + T + S+ E P+Y D+ +
Sbjct: 143 SVAPSAEQLLIDYIQYKGWRDVVYIHDGKNADR-TLRTMFSYLHEKSPKYQLFVDNYVAP 201
Query: 78 TAAVSIKTF 86
+ K F
Sbjct: 202 SDEEMFKEF 210
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 20 RPDYHRAVIDTITFYGWKNVIYVYDSHDEK 49
RP AV+D T + W ++ VY+ DE+
Sbjct: 134 RPQLFEAVVDMFTHWRWNRIVLVYEG-DER 162
>U39854-3|AAA81078.2| 263|Caenorhabditis elegans Hypothetical
protein W06B11.1 protein.
Length = 263
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 33 FYGWKNVIYVYD---SHDEKYVT 52
F+GWK VI +YD HDE+ T
Sbjct: 48 FHGWKRVITMYDKIVDHDEEQTT 70
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 6 IPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
IP SS + AV D H++ I +I F +++Y + ++ + W L SF+ +
Sbjct: 554 IPYSSQFVHCAVL---DGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQ 607
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 6 IPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
IP SS + AV D H++ I +I F +++Y + ++ + W L SF+ +
Sbjct: 554 IPYSSQFVHCAVL---DGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQ 607
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 6 IPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
IP SS + AV D H++ I +I F +++Y + ++ + W L SF+ +
Sbjct: 554 IPYSSQFVHCAVL---DGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQ 607
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 44 DSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
D H EK LL + + NF + DR E A ++ K + F
Sbjct: 1295 DRHSEKPKKGGLLSRLRDSSNTRKNFRDSDRRKEEKAAQLRQMKANSRSF 1344
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 44 DSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
D H EK LL + + NF + DR E A ++ K + F
Sbjct: 1416 DRHSEKPKKGGLLSRLRDSSNTRKNFRDSDRRKEEKAAQLRQMKANSRSF 1465
>Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical
protein C31A11.5 protein.
Length = 705
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 28 IDTITFYGWKNVIYV 42
+DT Y WKN+IY+
Sbjct: 387 VDTCQTYWWKNLIYI 401
>Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical
protein T20F10.4 protein.
Length = 416
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 40 IYVYDSHDEKYVTQWLLISFAS-EAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
IYV + + E+Y + L F AV QYNFA++ R S + F D +
Sbjct: 301 IYV-ELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYY 354
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 34 YGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFK 87
Y W+ ++Y D K + QW+ SEA P C E +A S++ +
Sbjct: 23 YTWQRLMYNLDDGKMKQIMQWM---ETSEAPP---ILFSSPCYENSATSVEELR 70
>U64852-6|AAB04969.1| 359|Caenorhabditis elegans Hypothetical
protein W01A11.2 protein.
Length = 359
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 57 ISFASEAVPQYNFAEDD 73
+ F ++ VP YNF E+D
Sbjct: 238 LKFGADLVPMYNFGEND 254
>AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical
protein Y26D4A.10 protein.
Length = 546
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 40 IYVYDSHDEKYVTQWLLISFAS-EAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
IYV + + E+Y + L F AV QYNFA++ R S + F D +
Sbjct: 301 IYV-ELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYY 354
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S
protein.
Length = 582
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 34 YGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFK 87
Y W+ ++Y D K + QW+ SEA P C E +A S++ +
Sbjct: 23 YTWQRLMYNLDDGKMKQIMQWM---ETSEAPP---ILFSSPCYENSATSVEELR 70
>AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical
protein Y40C7B.3 protein.
Length = 416
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 40 IYVYDSHDEKYVTQWLLISFAS-EAVPQYNFAEDDRCSETAAVSIKTFKGHDAMF 93
IYV + + E+Y + L F AV QYNFA++ R S + F D +
Sbjct: 301 IYV-ELNSERYPHECLKFDFDKFNAVQQYNFAKEFRNSYYESTKDYIFMEEDVYY 354
>U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical
protein F38B6.6 protein.
Length = 690
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 23 YHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
Y R D + WKN + SH + + ++++ S+
Sbjct: 544 YQRTNRDEMAMSAWKNATRIDPSHSQSWTNLFVVLDHLSQ 583
>AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 3 IQVIPPSSGLIDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQW 54
IQ+I PS I+++ + HR V + +++VIY DS + W
Sbjct: 370 IQMIKPSESHIEFSSLQKTQKHRYV----CYADFESVIYKLDSTNNSPDKSW 417
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 16 AVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASEAVPQYN 68
A+ P + + I F G NV+ SH Y L+S SE+ ++N
Sbjct: 1076 AIDPEPFVTQMELQAIRFVGNNNVLMWSKSHYMIYTVNGNLVSQGSESEGEHN 1128
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 22 DYHRAVIDTITFYGWKNVIYVYDSHD 47
+Y + + I + W N +Y+Y ++D
Sbjct: 135 EYSQLMERLINLWRWDNFVYIYSNYD 160
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,256
Number of Sequences: 27539
Number of extensions: 79118
Number of successful extensions: 255
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 21
length of query: 93
length of database: 12,573,161
effective HSP length: 69
effective length of query: 24
effective length of database: 10,672,970
effective search space: 256151280
effective search space used: 256151280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)
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