GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
         (93 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     19   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 34  YGWKNVIYVYDS 45
           Y W  + Y YDS
Sbjct: 158 YAWSTIDYTYDS 169


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 22  DYHRAVIDTITFYGWKNVIYVY 43
           +YH    DT     W  V+++Y
Sbjct: 317 NYHHRNADTHEMSEWVKVVFLY 338


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 56  LISFASEAVPQYNFAED 72
           L  F  + VP Y F ED
Sbjct: 309 LFEFPIKFVPSYPFEED 325


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,422
Number of Sequences: 429
Number of extensions: 943
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 140,377
effective HSP length: 48
effective length of query: 45
effective length of database: 119,785
effective search space:  5390325
effective search space used:  5390325
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)