Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000644-TA|BGIBMGA000644-PA|undefined
(93 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3... 33 0.026
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 31 0.081
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 30 0.25
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 30 0.25
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 30 0.25
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 27 1.3
At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3... 27 1.7
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 26 4.0
At4g00370.1 68417.m00051 sugar transporter family protein contai... 26 4.0
At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi do... 25 7.0
At2g47710.1 68415.m05958 universal stress protein (USP) family p... 25 7.0
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 25 9.3
At5g11750.1 68418.m01372 ribosomal protein L19 family protein si... 25 9.3
At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami... 25 9.3
At4g11630.1 68417.m01860 ribosomal protein L19 family protein si... 25 9.3
At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 25 9.3
>At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3.7)
(GLR5) identical to Glr5 [Arabidopsis thaliana]
gi|6644388|gb|AAF21042; plant glutamate receptor family,
PMID:11379626
Length = 921
Score = 33.1 bits (72), Expect = 0.026
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 26 AVIDTITFYGWKNVIYVYDSHDE 48
A++D I FYGWK VI VY S DE
Sbjct: 153 ALVDLINFYGWKEVISVY-SDDE 174
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 31.5 bits (68), Expect = 0.081
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 25 RAVIDTITFYGWKNVIYVYDSHD 47
RA+ + IT+YGW +V+ +Y+ D
Sbjct: 181 RAIAEMITYYGWSDVVALYNDDD 203
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 29.9 bits (64), Expect = 0.25
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 25 RAVIDTITFYGWKNVIYVYDSHD 47
RA+ + I++YGW VI +Y+ D
Sbjct: 151 RAIAEMISYYGWSEVIALYNDDD 173
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 29.9 bits (64), Expect = 0.25
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 25 RAVIDTITFYGWKNVIYVYDSHD 47
RA+ + I++YGW VI +Y+ D
Sbjct: 151 RAIAEMISYYGWSEVIALYNDDD 173
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 29.9 bits (64), Expect = 0.25
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 26 AVIDTITFYGWKNVIYVYDSHD 47
A+ D + FYGW+ V+ +Y D
Sbjct: 152 AIADIVQFYGWREVVAIYGDDD 173
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 13 IDYAVSMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQWL 55
I Y+VS PD R + G +++ VY + QWL
Sbjct: 70 IPYSVSTTPDRIRGTEVVVVLSGQSSLLIVYSTSPSASALQWL 112
>At1g42540.1 68414.m04905 glutamate receptor family protein (GLR3.3)
plant glutamate receptor family, PMID:11379626
Length = 933
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 26 AVIDTITFYGWKNVIYVYDSHD 47
A+ + FYGWK VI V+ D
Sbjct: 151 AIASIVDFYGWKEVIAVFVDDD 172
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 25 RAVIDTITFYGWKNVIYVYDSHDEKYVTQWLLISFASE 62
+ + I + W +V VY+ HD+ + LL+ E
Sbjct: 162 KGITSFINVFDWNSVALVYEDHDDWRESMQLLVEHFHE 199
>At4g00370.1 68417.m00051 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 541
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 31 ITFYGWKNVIYVYDSHDEKYVTQWLLISFAS 61
IT +GW +V Y + S + WL +++S
Sbjct: 283 ITKFGWPSVFYSFGSLGSIWFLLWLKFAYSS 313
>At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 850
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 51 VTQWLLISFASEAVPQYNFAEDDRCSETAAVSI 83
VT+W +++F++ PQ + RC + +++
Sbjct: 455 VTRWAVVNFSARCDPQKIIDDLTRCGKMKGINV 487
>At2g47710.1 68415.m05958 universal stress protein (USP) family
protein similar to ER6 protein [Lycopersicon
esculentum] GI:5669654; contains Pfam profile PF00582:
universal stress protein family
Length = 162
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 39 VIYVYDSHDEKYVTQWLLISFASEAVPQYNF 69
V+ V DS Y +W L F + P Y F
Sbjct: 11 VVGVDDSEQSTYALEWTLDRFFAPYAPNYPF 41
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens]
GI:4337460
Length = 2376
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 46 HDEKYVTQWLLISFASEAVPQYNFAEDDRCSETAAVSIKTFKGHD 90
H ++ W LISF + +P+ ++C A+ G D
Sbjct: 418 HTSEHSMLWRLISFTEKTIPEMYKILVEKCQYQEALDFSDSHGLD 462
>At5g11750.1 68418.m01372 ribosomal protein L19 family protein
similar to plastid ribosomal protein L19 precursor
[Spinacia oleracea] gi|7582403|gb|AAF64312
Length = 229
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 57 ISFASEAVPQYNFAEDDRCSETAAVSIKT 85
+ F+S A+P+ +F RC T S+++
Sbjct: 63 VGFSSSAIPKQDFKYSLRCFSTTGDSVQS 91
>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
protein low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 432
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 17 VSMRPDYHRAVIDTITFYGWKNVIY 41
+ +P HR + +GW N+IY
Sbjct: 192 MEFKPPLHRYRQHNLVVHGWPNIIY 216
>At4g11630.1 68417.m01860 ribosomal protein L19 family protein
similar to plastid ribosomal protein L19 precursor
[Spinacia oleracea] gi|7582403|gb|AAF64312
Length = 225
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 59 FASEAVPQYNFAEDDRCSETAAVS 82
F+S A+P+ NF RC T S
Sbjct: 64 FSSSAIPKQNFTYASRCFSTTGDS 87
>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
PF05127: Putative ATPase (DUF699)
Length = 1024
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 13 IDYAV--SMRPDYHRAVIDTITFYGWKNVIYVYDSHDEKYVTQ-WLLISFASEAVP 65
+DY V S PD+ +AV+ F + I H+ + ++Q LL+ + A+P
Sbjct: 338 LDYDVVKSANPDFKKAVVRINIFKQHRQTIQYIQPHEHEKLSQVELLVIDEAAAIP 393
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,289
Number of Sequences: 28952
Number of extensions: 73938
Number of successful extensions: 213
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 17
length of query: 93
length of database: 12,070,560
effective HSP length: 69
effective length of query: 24
effective length of database: 10,072,872
effective search space: 241748928
effective search space used: 241748928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)
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