Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000642-TA|BGIBMGA000642-PA|IPR005963|Tyrosine
5-monooxygenase, IPR002912|Amino acid-binding ACT, IPR001273|Aromatic
amino acid hydroxylase
         (502 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...   380   e-107

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score =  380 bits (935), Expect = e-107
 Identities = 201/436 (46%), Positives = 277/436 (63%), Gaps = 19/436 (4%)

Query: 47  ERISVMFTLKNQVGGLVRALSVFQDLGINVLHIESRKSMTEVSSADILVDVECDPQRMEQ 106
           ++ +++  L+  +G L R L   ++    V H+ESR S  E    D+LV V+   Q + Q
Sbjct: 86  QKAALVLRLREGIGSLARILKTIENFKGTVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQ 145

Query: 107 LKRMLKREVQDFEVVPPQTGDEFPPPTPMSAAASFDFGEMPWFPRKISDLDRAQNVLM-Y 165
           L R L R+    + V             + A  S    + PWFPR  SDLD   +++  +
Sbjct: 146 LIRNL-RQSSALDGVT------------LLADNSVSIKD-PWFPRHASDLDNCNHLMTKF 191

Query: 166 GSELDADHPGFKDPIYRKRREQFAAIANNYKYGHPIPKVQYTETEIKTWGIVFRELHKLY 225
             +LD +HPGF D  YR RR+  A IA  Y+YG  IP V YTETE +TW  VF  L  L 
Sbjct: 192 EPDLDMNHPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTETETETWTRVFNTLVDLV 251

Query: 226 QKHACPEYLENWPQLVKYCGYREDNLPQLEDVSSFLKRKTGFQLRPVAGYLSPRDFLSGL 285
            KHAC EY  N+ ++ +   +    +PQL++VS FLK+ TGF LRP AG L+ RDFLS L
Sbjct: 252 PKHACAEYRRNFKKMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLTSRDFLSSL 311

Query: 286 AFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLLANPSFAQFSQELGLASLGASDADI 345
           AFRVF  TQYIRH   P++TPEPDC HELLGHMPLLA+PSFAQFSQE+GLASLGASD +I
Sbjct: 312 AFRVFQSTQYIRHIKSPYHTPEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEI 371

Query: 346 DKLATLYFFTVEFGLCRQ-PDGSFCVYGAGLLSSVAELQHALTTPE-KIKRFDPDITVHE 403
           +KL+T+Y+FTVEFGLC++ PD     YGAGLLS+  EL HALT+ + + + F+P  T  +
Sbjct: 372 EKLSTIYWFTVEFGLCKEGPDVK--AYGAGLLSAYGELLHALTSGKCEHRPFEPKSTAVQ 429

Query: 404 ECIITSYQNAYYYTDSFEEAKEKMRAFAESIQRPFGVRYNPYTQSVEVLSNAQKITALVS 463
           +     YQ  Y+  DSFE+AKEK R +  ++ RPF VRY+PYTQ VE+L +  ++  L++
Sbjct: 430 KYQDQDYQPIYFVADSFEDAKEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVDRLDNLMA 489

Query: 464 ELRGDLCIVSSAIKKI 479
           ++  ++  +++A+ K+
Sbjct: 490 QVNTEMTHLTNAVNKL 505


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,707
Number of Sequences: 429
Number of extensions: 7116
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 502
length of database: 140,377
effective HSP length: 61
effective length of query: 441
effective length of database: 114,208
effective search space: 50365728
effective search space used: 50365728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)