GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000642-TA|BGIBMGA000642-PA|IPR005963|Tyrosine
5-monooxygenase, IPR002912|Amino acid-binding ACT, IPR001273|Aromatic
amino acid hydroxylase
         (502 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   2.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.7  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   4.9  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   4.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   6.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 439  GVRYNPYTQSVEVLSNAQKITALVSELRGDLCIVSSAIKKISAQDSTL 486
            G RY  Y ++   +        L    RG+  IV SA K I    +++
Sbjct: 1460 GTRYQVYAKAYNSIGTGDPSDTLNPRTRGEKPIVPSAEKFIEVSSNSI 1507


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 202 PKVQYTETEIKTWGIVFRELHK 223
           P++ YT TE +  G++F  LHK
Sbjct: 638 PELNYTTTEKELLGVIF-ALHK 658


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 260 FLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFH 291
           F+ R +G +++   GY  P+D +  L     H
Sbjct: 364 FISRVSGSEIQTKTGYTIPKDCMVNLQIYDMH 395


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 260 FLKRKTGFQLRPVAGYLSPRDFLSGLAFRVFH 291
           F+ R +G +++   GY  P+D +  L     H
Sbjct: 364 FISRVSGSEIQTKTGYTIPKDCMVNLQIYDMH 395


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 273 AGYLSPRDFLSGLAFRVFHCTQY 295
           AG+ SPR  L    FR  H   Y
Sbjct: 62  AGFPSPRGALGAYPFRPMHQNSY 84


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 127 DEFPPPTPMSAA 138
           +E PPP P SAA
Sbjct: 8   EESPPPAPQSAA 19


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,992
Number of Sequences: 317
Number of extensions: 5368
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 502
length of database: 114,650
effective HSP length: 60
effective length of query: 442
effective length of database: 95,630
effective search space: 42268460
effective search space used: 42268460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)