GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000642-TA|BGIBMGA000642-PA|IPR005963|Tyrosine
5-monooxygenase, IPR002912|Amino acid-binding ACT, IPR001273|Aromatic
amino acid hydroxylase
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   1.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   1.5  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    29   2.0  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    28   3.5  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    28   3.5  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   4.6  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    27   8.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   8.0  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 370 VYGAGLLSSVAELQHALTTPEKIKRFDPDITVHEECIITSYQNAYYYTDSFEEAKEKMRA 429
           VY    + S   LQHAL    +   FD +    EE  + +  +  Y  D F+ AKE   A
Sbjct: 146 VYALHRIMSHKSLQHALPPEHRNIWFDMEKQKKEE--LKNKHSWLYNEDPFKAAKELQAA 203

Query: 430 FAESIQRP 437
            A S  +P
Sbjct: 204 RASSAAKP 211


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 53  FTLKNQVGGLVRALSVFQDLGINVLHIESRKSMTEVSSADILVDVECDPQRMEQLKRMLK 112
           F+L     G++  +S F D     LH+   K +       ++ D++  PQR E LK  L+
Sbjct: 580 FSLSPSTRGIILCISGFTDK----LHVLLEKVVA------MMRDLKVHPQRFEILKNRLE 629

Query: 113 REVQDFEVV 121
           +E++D++ +
Sbjct: 630 QELKDYDAL 638


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 153 ISDLDRAQNVLMYGSELDADHPGFKDPIYRKRREQFAAIANNYKYGHPI 201
           +  LD  QNV +    L+ D P  +  I R  ++ F     N KY  P+
Sbjct: 459 VDSLDDLQNVALMVHYLNNDDPQIQIEILRSLKDTFIKAGENVKYLLPV 507


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 30  PKLGELHAARVQAQAESERISVMFTLKNQVGGLVRALSVFQDLGINVLHIESRKSMTEVS 89
           P L ++H   ++    +E + +   +  Q   +  A     ++ + +L  E++KS   + 
Sbjct: 276 PLLKQVHKYAIEVAEYAESLGIELEVPTQSNMVTLA-----NINVAILCDEAKKSGIILM 330

Query: 90  SADILVDVECDPQRMEQLKRMLKREVQ 116
              I+  ++  P  +E LK +L+R V+
Sbjct: 331 GPRIVFHIQITPDAVEILKNVLRRTVE 357


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 379 VAELQHALTTPEKIKRFDPDITVHEECIITSYQNAYYY 416
           + +  H    PEK+ +F  + +V E+C+  S    Y +
Sbjct: 209 ILQKAHEFQIPEKVYQFSLEHSVDEDCVTKSLHTLYLF 246


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 93  ILVDVECDPQRMEQLKRMLKREVQDFEVVPPQTGDEFPPPTP 134
           I +++ C P +  Q+   +K+   D  V+ P T +E   P+P
Sbjct: 531 ISLEIHCCPDQQRQMVSYMKQAFGDTLVMKPVTANESVLPSP 572


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 154 SDLDRAQNVLMYGSELDADHPGFKDPIYRKR 184
           SD+D   +  +    +  +H GF DP++RK+
Sbjct: 199 SDMDNGYDPFLNPDSIGVEH-GFSDPVFRKQ 228


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 95  VDVECDPQRMEQLKRMLKREVQDFEVVPPQTGDEFPPPTPMSAAASFD 142
           + V+ D     QL  +LK      ++  PQ    FP P P+ + +SFD
Sbjct: 248 ISVDVDADASSQLLSLLKSSTAPSDLATPQP-STFPQP-PVESHSSFD 293


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,247
Number of Sequences: 5004
Number of extensions: 101783
Number of successful extensions: 255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 9
length of query: 502
length of database: 2,362,478
effective HSP length: 76
effective length of query: 426
effective length of database: 1,982,174
effective search space: 844406124
effective search space used: 844406124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)