Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000641-TA|BGIBMGA000641-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR013838|Beta tubulin, autoregulation binding site,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (269 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...   245   3e-67
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...   109   2e-26
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    25   0.45 
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    25   0.45 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.0  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.6  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score =  245 bits (599), Expect = 3e-67
 Identities = 116/132 (87%), Positives = 118/132 (89%)

Query: 1   MRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY 60
           MRDIRYKWNEGPNSVGVS+EVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY
Sbjct: 10  MRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGY 69

Query: 61  YLIQIYIPSGLIVIISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAALPKISYVKS 120
           YLIQIYIPSGLIVIISWVSFWLNRNATPARV+LG              NAALPKISYVKS
Sbjct: 70  YLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS 129

Query: 121 IDVYLGTCFVMV 132
           IDVYLGTCFVMV
Sbjct: 130 IDVYLGTCFVMV 141


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score =  109 bits (263), Expect = 2e-26
 Identities = 50/52 (96%), Positives = 52/52 (100%)

Query: 1   MRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEI 52
           MRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHR+RA+EISLTTGNYSRLACEI
Sbjct: 192 MRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYSRLACEI 243


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 74  IISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAALPKISY 117
           + + + +WL+  A P++++LG              N +L   +Y
Sbjct: 241 VAAGIQYWLDEGAPPSKINLGLGSYGRGFALADPTNTSLYAATY 284


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 74  IISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAALPKISY 117
           + + + +WL+  A P++++LG              N +L   +Y
Sbjct: 241 VAAGIQYWLDEGAPPSKINLGLGSYGRGFALADPTNTSLYAATY 284


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 71  LIVIISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAAL 112
           L+ + + +  W+ R A P +++LG              NA L
Sbjct: 236 LLTVDAAIRGWIQRGADPQKIALGLPVYGKTFTLSSASNAKL 277


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 6/21 (28%), Positives = 15/21 (71%)

Query: 74  IISWVSFWLNRNATPARVSLG 94
           + + + +WL+  A P++++LG
Sbjct: 240 VAAGIQYWLDEGAPPSKINLG 260


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 60  YYLIQIYIPSGLI-VIISWVSFWLN 83
           Y   QI+I   L  VI+ W+SF+LN
Sbjct: 127 YKRTQIFITCELFFVILLWISFFLN 151


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory
          receptor candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 54 FVRSMGYY--LIQIYIPSGLIVIISWVSFWLNRNA 86
          F  +  YY  L + Y    ++V I WV +WL  +A
Sbjct: 33 FPTNQKYYPSLAKCYACLLMVVKILWVIYWLQDDA 67


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 76  SWVSFWLNRNATPAR 90
           +W S WLN+ A  A+
Sbjct: 361 AWQSHWLNKGAEQAK 375


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,954
Number of Sequences: 317
Number of extensions: 1805
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 269
length of database: 114,650
effective HSP length: 56
effective length of query: 213
effective length of database: 96,898
effective search space: 20639274
effective search space used: 20639274
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)