GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000641-TA|BGIBMGA000641-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR002289|Gamma-aminobutyric-acid A receptor, beta subunit,
IPR013838|Beta tubulin, autoregulation binding site,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (269 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...   134   3e-33
AY787484-1|AAV87217.1|   70|Anopheles gambiae GABA receptor subu...   116   7e-28
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          26   1.3  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score =  134 bits (324), Expect = 3e-33
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 2/142 (1%)

Query: 3   DIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYL 62
           D+   W   P   GV  E  LPQF ++G+     +  L TG Y RL+   +  R++GY++
Sbjct: 169 DVVMYWRSTPIR-GVE-EAELPQFTIIGYETNDRKEKLATGIYQRLSLSFKLQRNIGYFV 226

Query: 63  IQIYIPSGLIVIISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAALPKISYVKSID 122
            Q Y+PS LIV++SWVSFW+N  AT ARV+LG               ++LP+ISYVK+ID
Sbjct: 227 FQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAID 286

Query: 123 VYLGTCFVMVFASLLEYATVGY 144
           +YL  CFV VFA+LLEYA V Y
Sbjct: 287 IYLVMCFVFVFAALLEYAAVNY 308


>AY787484-1|AAV87217.1|   70|Anopheles gambiae GABA receptor subunit
           protein.
          Length = 70

 Score =  116 bits (279), Expect = 7e-28
 Identities = 55/70 (78%), Positives = 55/70 (78%)

Query: 61  YLIQIYIPSGLIVIISWVSFWLNRNATPARVSLGXXXXXXXXXXXXXXNAALPKISYVKS 120
           YLIQIYIPSGLIVIISWVSFWLNRNATPARV LG              NAALPKISYVKS
Sbjct: 1   YLIQIYIPSGLIVIISWVSFWLNRNATPARVGLGVTTVLTMTTLMSSTNAALPKISYVKS 60

Query: 121 IDVYLGTCFV 130
           IDVYLGTCFV
Sbjct: 61  IDVYLGTCFV 70


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 246  LMEQEQPYLDPHRSPTKKQEDNPN 269
            L+E+ +P  +P R  TK+ +  P+
Sbjct: 1018 LLEEHEPEAEPQRKATKRSDSGPD 1041


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,727
Number of Sequences: 2123
Number of extensions: 6627
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 269
length of database: 516,269
effective HSP length: 63
effective length of query: 206
effective length of database: 382,520
effective search space: 78799120
effective search space used: 78799120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)