Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000640-TA|BGIBMGA000640-PA|IPR001128|Cytochrome P450
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    48   3e-06
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    37   0.006
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    29   1.3  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   1.7  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   3.0  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   3.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   5.2  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   5.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   6.9  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 5/161 (3%)

Query: 237 NDQLKTVCLDLIIAGSQTTGNAVKFALLSVLRNKNIQEKIFNE-IENTIGD-SMPCWAD- 293
           ++++    L  + A    T +A+ +    +  + ++ +K+  E +    GD  +P   D 
Sbjct: 306 DEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDL 365

Query: 294 SSKLVYTSAFLLEVMRIHTIAPLAGPRRVLQD-TVIDGYVIPKETTVLISLADIHLDPNL 352
             K+ YT A + E +R+     L  P RV +   +   Y +PK+  V+ +L     D  +
Sbjct: 366 MEKMTYTRAVVKECLRLRPPV-LMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKV 424

Query: 353 WPDPHEIKPERFIDEKGLSKSNEHIYPFGSGRRRCPGDSLA 393
           +P+P    P+R+       +S ++   FG+G   C G   A
Sbjct: 425 YPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYA 465


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 239 QLKTVCLDLIIAGSQTTGNAVKFALLSVLRNKNIQEKIFNEIENTIGDSMPCWADSSK-L 297
           ++  + + L++AG  T+   + + L  +     I E ++ E +  +G+++    D  K +
Sbjct: 277 EIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYKDM 336

Query: 298 VYTSAFLLEVMRIHTIAPL-AGPRRVLQDTVIDG--YVIPKETTVLISLADIHLDPNLWP 354
              +  + E +R+H   P+ +  R+V +D  + G   VIP    +L +      +   + 
Sbjct: 337 PLLNYVIQETLRLH--PPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFT 394

Query: 355 DPHEIKPERFIDEKGLSKSNEHI---------------YPFGSGRRRCPGDSLARSFVFI 399
              +  P+R+ D     ++ E I                PFG+GR RC G+  A   +  
Sbjct: 395 HATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHLST 454

Query: 400 IFVGILQKY 408
           I    +  Y
Sbjct: 455 IISKFVHDY 463


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 116 LGKRLGVTFVDGPLWREHRQFTVKHLKNVGFGKTSMELEIQNELKL-LREYIN 167
           L K+   TF D P + E R    KH++ + F +T +E+++  ++K  +RE++N
Sbjct: 38  LYKKKPKTF-DSPEFHEGRIRGQKHIEGLWFVQTYLEVDLSKKVKKGIREFLN 89


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 349 DPNLWPDPHEIKPERFIDEKGLSKSNEHIYPFGSGRRR 386
           DPN+WP P EI  ++  D K    S + + P  +G+ +
Sbjct: 110 DPNVWPSP-EIAEKQVEDRKLSDDSQKPLAPKANGKEK 146


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 138 VKHLKNVGFGKTSMELEIQNELKLLREYINDNKHKPIKVD 177
           +KHL N     +++ L++   L+LLR    D K K IKVD
Sbjct: 427 IKHLLNCFLNSSTVSLDVSMVLELLR----DLKKKKIKVD 462


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 399 IIFVGILQKYRIDCVNGVLPSNEADIGLLAAPKPFVANF 437
           I+  G++   RI  V G+  S EA +G +++  P V NF
Sbjct: 162 IVCQGVVDNNRIQHVKGLSYSLEALLGGISSSNPLVVNF 200


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 22   PTDPDFLNQWFMAPGPIWYPFFGSSSIVQQMTSKHGSQ 59
            P +PD   Q  M  G +WYP     +        HG Q
Sbjct: 1947 PANPDSTEQVLMEAGQVWYPNSAFKTAQAINDFNHGEQ 1984


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 133 HRQFTVKHLKNVGFGKTSMELEIQNELKLLREYINDNKHKPIKVDSMFSSAVMNVLWKYV 192
           +R+  +K +K VG  K  +++    E+K LRE  +DN  + + V S  S+  +N++ +++
Sbjct: 34  NRRVAIKKIK-VGQFKDGIDISALREIKFLRESRHDNVIELVDVFSTKSN--LNIILEFL 90


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 135 QFTVKHLKNV---GFGKTSMELEIQNELKLLREYINDNKHKPIKVDSMFSSAV---MNVL 188
           +F  K++  V   G G ++   E+   +KLL E +  +K +     S  S+AV    N +
Sbjct: 206 RFAYKYIIEVLDRGLGPSTQMSEVNISIKLLNEILLSSKKEKDSSTSFISTAVADYTNKI 265

Query: 189 WKYVAGERIREDKLERLLELFYL 211
              +  E   ++  ++LLE+  L
Sbjct: 266 LSLLKKEEAPDELTQKLLEVLGL 288


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,300
Number of Sequences: 5004
Number of extensions: 89957
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 10
length of query: 441
length of database: 2,362,478
effective HSP length: 75
effective length of query: 366
effective length of database: 1,987,178
effective search space: 727307148
effective search space used: 727307148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)