Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000639-TA|BGIBMGA000639-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 33 0.057
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.53
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 3.7
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 3.7
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 26 5.0
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 26 6.6
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.6
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 8.7
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 8.7
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 32.7 bits (71), Expect = 0.057
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 96 ALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQHLP 155
A+ K + T SS+ + P + LLG +T + + S A +P+ + P H + ++P
Sbjct: 232 AIVRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFA-----APQAHPLPSHLSQSNVP 286
Query: 156 SRAPPGSTPASAKPR 170
+ S P+ A PR
Sbjct: 287 PQLSHSSVPSPAPPR 301
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 29.5 bits (63), Expect = 0.53
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+R+N + T ++AW+ E KKN +PT+ I + L Q + +F + K+
Sbjct: 93 KRRNISINTPEEIEAWIQERKKN-WPTE-SNIRSKQLLNTQLEQENIFFLQFMKLYLKKM 150
Query: 67 KMTWEP 72
M +P
Sbjct: 151 GMVVKP 156
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 90 SNDGKDALDGKDSGTGSSEDGDRPQQRL--DLLGQRTESE--WSESRADSGPESPEPYER 145
+ + + +++ +SG S + G P + T S W++ + + P +P P+++
Sbjct: 384 NGEPQKSIEFSESGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQ 443
Query: 146 PI----HPAYQHLPSRAPPGSTP 164
P PA PS PP P
Sbjct: 444 PAAPQSAPALSMNPSSLPPWQQP 466
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 104 TGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQH 153
TGS +DG + +L Q + S S + S S + YE+ I +H
Sbjct: 7 TGSDDDGGDRESSPVMLSQSFDPMSSSSNSSSEENSDDDYEKTISSKKRH 56
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 95 DALDG--KDSGTGSSEDGDRPQQRLDLLGQR--TESEWSESRADSGPESPEPYERPIHPA 150
D LD KD T ++ + R++ L + ES+ + + EP R + P
Sbjct: 238 DFLDNYYKDDDTVLEDNQLKSNSRIETLEEEDGAESDSITNTVSNASSDAEPAHRHLGPV 297
Query: 151 YQ---HLPSRAPPGSTPAS 166
Y+ HLPS++ ST ++
Sbjct: 298 YENSGHLPSKSHFSSTDSN 316
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 6 ARRKNATRETTSTLKAWLNEHKK--NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
A + R T L L E K NP P EKI + + V+ WF N R + K
Sbjct: 165 APKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGREL--NIPERSVTIWFQNRRAKSK 222
Query: 64 KENKMTWEPRNRV 76
++ E R R+
Sbjct: 223 LISRRQEEERQRI 235
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPY 31
+G R NATR + +L WL ++N Y
Sbjct: 107 SGLSRSNATRYSRRSLSDWLETIRENNY 134
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 144 ERPIHPAYQHLPSRAPPGSTPASA 167
++PIHP+Y S+AP G+ +A
Sbjct: 374 QQPIHPSYDSRFSKAPQGTDALAA 397
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 125 ESEWSESRADSGPESPEPYERPIHPAYQHLPSRAPPGSTPASAKPRIWSLADMASKDG 182
+S W + +P +P+ +Y H + P +P KP + + D+ G
Sbjct: 2 DSRWKLPFMSNKGTPEQPMRKPLSGSYSHNSAGPTPNMSPFEQKPPLPTHMDVRRPSG 59
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 37 KIMLAIITKMTLTQVSTWFANARRRL---KKENKMTW 70
+IML I K+ + ++ W+ +RL KEN++ W
Sbjct: 226 QIMLPITEKLDILKLMDWYLAKTKRLVLGGKENEVAW 262
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 136 GPESPEPYERPIHPAYQHLPSRAP 159
G E PY+ P+ PA HLP+ P
Sbjct: 1722 GAEMASPYQ-PLQPASAHLPNLQP 1744
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 95 DALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQHL 154
D D ++S + + PQ + G S+ S + PE +R + + +H
Sbjct: 35 DQADNENSDAKAHQPQHSPQHSTENQGHTGTSDTSSLEMELSKLHPESKQRQLPHSPEHE 94
Query: 155 PSRAPPGS 162
SR+P S
Sbjct: 95 RSRSPIAS 102
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 144 ERPIHPAYQHLPSRAPPGSTPASAKPR---IWSLADM--ASKDGE 183
ER ++ YQ + + PG+ P+ PR + LAD+ +K GE
Sbjct: 371 ERTVYNNYQRITLQESPGTVPSGRLPRHREVILLADLVDVAKPGE 415
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.129 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,117
Number of Sequences: 5004
Number of extensions: 38147
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 14
length of query: 269
length of database: 2,362,478
effective HSP length: 72
effective length of query: 197
effective length of database: 2,002,190
effective search space: 394431430
effective search space used: 394431430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)
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