GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000639-TA|BGIBMGA000639-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
         (269 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    40   2e-05
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    37   2e-04
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    37   2e-04
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    34   0.001
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    34   0.002
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    33   0.004
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        29   0.033
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    29   0.044
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.23 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.71 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.8  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 8  RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
          R+  T  T   L A  N+ K   Y +  E++ LA+   +T TQV  WF N R + KK+N
Sbjct: 9  RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 67


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 1  MDLNGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60
          ++ NG  ++  T  T         E   N Y T+  +I +A    +T  Q+  WF N R 
Sbjct: 2  VNANGEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 61

Query: 61 RLKKENKM 68
          + KKE+KM
Sbjct: 62 KWKKEHKM 69


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 8   RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
           R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R + KKENK
Sbjct: 274 RQTYTRYQTLELE---KEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 330

Query: 68  MTWEP 72
               P
Sbjct: 331 SKGTP 335


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 8  RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
          R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R + KKEN
Sbjct: 12 RQTYTRYQTLELE---KEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 8  RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
          R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R +LKKE
Sbjct: 12 RQTYTRFQTLELE---KEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 66


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 8  RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
          RK  T  TT  L +   + ++  Y T  E+   +    +T TQV  WF N R + K+
Sbjct: 10 RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 29.5 bits (63), Expect = 0.033
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
          ++  Y    E+  LA    +T TQV  WF N R + KK  K
Sbjct: 1  QRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 41


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 4  NGARRKNATRETTST--LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
          NG+  +   R   S   L     E  +N Y T+  +  L+    +T  Q+  WF N R +
Sbjct: 15 NGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAK 74

Query: 62 LKK 64
          +KK
Sbjct: 75 IKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
          E  +N Y T+  +  L+    +   Q+  WF N R ++KK
Sbjct: 38 EFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 129 SESRADSGPESPE--PYERPIHPAYQHLPSRAPPGSTP 164
           +ES A+ G   P   P  RP HP  +  P   P  + P
Sbjct: 92  AESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 130 ESRADSGPESPE--PYERPIHPAYQHLPSRAPPGSTP 164
           E  A+ G   P   P  RP HP  +  P   P  + P
Sbjct: 119 EPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 34  KGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 70
           +G K ++ +  KM+  ++ST +A   + ++   + +W
Sbjct: 120 RGYKCIIVMPEKMSDEKISTLYALGAKIIRTPTEASW 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.129    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,535
Number of Sequences: 429
Number of extensions: 2929
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 12
length of query: 269
length of database: 140,377
effective HSP length: 57
effective length of query: 212
effective length of database: 115,924
effective search space: 24575888
effective search space used: 24575888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)