Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000639-TA|BGIBMGA000639-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
(269 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 57 1e-08
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ... 57 1e-08
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 55 4e-08
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 55 4e-08
At2g27220.1 68415.m03271 homeodomain-containing protein 54 8e-08
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 54 1e-07
At2g27990.1 68415.m03392 homeodomain-containing protein 54 1e-07
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 54 1e-07
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 54 1e-07
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 54 1e-07
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT... 53 2e-07
At2g16400.1 68415.m01877 homeodomain-containing protein 53 2e-07
At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT... 53 2e-07
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 53 2e-07
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to... 52 3e-07
At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT... 52 4e-07
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 52 5e-07
At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6) n... 52 5e-07
At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6) n... 52 5e-07
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7... 50 1e-06
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 50 2e-06
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 45 6e-05
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 44 8e-05
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 43 2e-04
At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to ... 40 0.002
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 34 0.12
At4g10670.1 68417.m01743 transcription elongation factor-related... 33 0.20
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 33 0.20
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 32 0.35
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 32 0.47
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ... 32 0.47
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.47
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 31 0.62
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 31 0.81
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ... 31 0.81
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati... 31 0.81
At2g21800.1 68415.m02591 expressed protein 31 1.1
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 30 1.9
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF... 30 1.9
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 2.5
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 29 2.5
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 29 3.3
At5g17320.1 68418.m02029 homeobox-leucine zipper family protein ... 29 3.3
At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z... 29 3.3
At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT... 29 4.3
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 29 4.3
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 29 4.3
At1g13050.1 68414.m01513 expressed protein 29 4.3
At5g53440.1 68418.m06641 expressed protein 28 5.7
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ... 28 5.7
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 5.7
At3g51330.1 68416.m05619 aspartyl protease family protein contai... 28 5.7
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 5.7
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 5.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 7.6
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 28 7.6
At3g06220.1 68416.m00715 transcriptional factor B3 family protei... 28 7.6
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 28 7.6
At2g20760.1 68415.m02440 expressed protein 28 7.6
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ... 28 7.6
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + S L+AWL EH +PYP + EKIMLA T ++ QV+ WF NAR RL K
Sbjct: 355 QRGLPENSVSVLRAWLFEHFLHPYPKESEKIMLAKQTGLSKNQVANWFINARVRLWK 411
>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
identical to BEL1-like homeodomain 3 (GI:13877515)
[Arabidopsis thaliana]
Length = 524
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
++ + S L+AWL EH +PYP + EKIML+ T ++ QV+ WF NAR RL
Sbjct: 350 QRGLPENSVSILRAWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRL----- 404
Query: 68 MTWEPRNRVXXXXXXXXXXXHKSNDGKDALDGKDSGTGSSEDGDRPQQR 116
W+P SN +D +++ ED QQ+
Sbjct: 405 --WKPMIEEMYKEEFGESAELLSNSNQDTKKMQETSQLKHEDSSSSQQQ 451
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ S L+AWL EH +PYP +K MLA T +T +QVS WF NAR RL K
Sbjct: 389 QRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ S L+AWL EH +PYP +K MLA T +T +QVS WF NAR RL K
Sbjct: 389 QRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
>At2g27220.1 68415.m03271 homeodomain-containing protein
Length = 431
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + S L++WL EH +PYP +K+MLA T +T +QVS WF NAR R+ K
Sbjct: 232 QRGLPEKVVSVLRSWLFEHFLHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVRMWK 288
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+TTS LKAW H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 354 DTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 401
>At2g27990.1 68415.m03392 homeodomain-containing protein
Length = 584
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + L+AWL +H +PYPT +K MLA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWK 484
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL-KKENKMTWEPRNRVX 77
L+AWL EH +PYP +KIMLA T ++ QVS WF NAR RL K + ++
Sbjct: 329 LRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEIYKEEFTEN 388
Query: 78 XXXXXXXXXXHKSNDGKDALDGKDSGTGSSEDGDRP 113
S G A D +D S+D +P
Sbjct: 389 DSNSSSENTPKMSEIGPVAADDEDRAREFSQDQTKP 424
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + + L+AWL EH NPYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 484
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + + L+AWL EH NPYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 484
>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
/ homeodomain containing protein 1 (H1) identical to
homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
[Arabidopsis thaliana]
Length = 383
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
+TTS LK W H K PYPT+ +K L T + L Q++ WF N R+R N T
Sbjct: 313 DTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSST 368
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
L+AWL EH +PYP +KIMLA T ++ QVS WF NAR RL K
Sbjct: 300 LRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWK 345
>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
identical to homeobox protein knotted-1 like 4 ( KNAT4)
SP:P48001 from [Arabidopsis thaliana]
Length = 393
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+TTS LK+W H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 318 DTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 365
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 17 STLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ L+AWL +H +PYPT +K+MLA T ++ QVS WF NAR R+ K
Sbjct: 361 TVLRAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWK 408
>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
cDNA homeobox protein (BEL1) GI:28202124
Length = 611
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ +TL+AWL EH +PYP+ +K +LA T ++ +QVS WF NAR RL K
Sbjct: 395 QRGLPERAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 451
>At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT2)
(K1) identical to homeobox protein knotted-1 like 2 (
KNAT2/ ATK1) SP: from [Arabidopsis thaliana]
Length = 310
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
RE L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 239 REARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKR 287
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ + + L+AWL EH +PYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 501 QRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 557
>At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 326
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
RE L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 254 REARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 302
>At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 327
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
RE L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 255 REARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 303
>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
contains Pfam profiles: PF03789 ELK domain, PF03790
KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
protein HD1 SP:P46606 from [Brassica napus]; identical
to cDNA homeodomain transcription factor KNAT7 (KNAT7)
GI:11878229
Length = 291
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+TT+ LK W +H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 226 DTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ ++ S L+ W+ ++ +PYP EK +LAI + +T +QVS WF NAR RL K
Sbjct: 376 QRGLPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVRLWK 432
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+E L W H K PYP++ EK+ LA T + Q++ WF N R+R
Sbjct: 310 KEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKR 358
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 15 TTSTLKAWLNEHKKNP-------YPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ + L+AWL +H +P YP + EK++LA T ++ QVS WF NAR RL K
Sbjct: 213 SVAILRAWLFQHFLHPSVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWK 269
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+E L W + H K PYP++ +K+ LA T + Q++ WF N R+R
Sbjct: 293 KEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKR 341
>At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to
Homeobox protein FWA (SP:Q9FVI6) [Arabidopsis
thaliana]; contains Pfam profiles PF01852: START domain
and PF00046: Homeobox domain; identical to cDNA
homeodomain-containing transcription factor FWA
(FWA)GI:13506819
Length = 686
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 DLNGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
D +G R + R T + N + +NP+PT+ ++ L M + QV WF N +R
Sbjct: 35 DQDGGRMRRTHRRTAYQTQELENFYMENPHPTEEQRYELGQRLNMGVNQVKNWFQN-KRN 93
Query: 62 LKKEN 66
L+K N
Sbjct: 94 LEKIN 98
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome
deletion transcript 9 [Homo sapiens]; contains Pfam
PF02791: DDT domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
G + +T + L+ N + PYP++ + L++ ++ Q+ WF + RRLK+
Sbjct: 15 GESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCH--RRLKE 72
Query: 65 ENKMTWEPRNR 75
T R R
Sbjct: 73 RKSTTPSKRQR 83
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 98 DGKDSGTGSSEDGDRPQQRLDL-LGQRTESEWSESRADSGPESPE 141
DG DS +G SED D+ + D+ + +E E SES +D E +
Sbjct: 353 DGSDSESGGSEDSDKGYEPSDVEVESESEDETSESESDDEEEEED 397
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
N +RK R TT ++ K+ P+P + ++ L+ + QV WF N R ++K
Sbjct: 98 NKRKRKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 157
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59
+A ++T + ++N YP K K LA +MT+ QV+ WF + R
Sbjct: 617 SACKQTDPKTQRLYISFQENQYPDKATKESLAKELQMTVKQVNNWFKHRR 666
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A++K R T ++ K+NP+P ++ L+ + QV WF N R ++K +
Sbjct: 110 AKKKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMKAQ 169
>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
similar to homeobox transcription factor Hox7
[Lycopersicon peruvianum] GI:19486; contains Pfam
PF00046: Homeobox domain
Length = 476
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L+ + NEHK YPT+ K LA +T QVS WF + R + K+ K
Sbjct: 3 LENFYNEHK---YPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHVK 48
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 56 ANARRRLKKENKMTWEPRNRVXXXXXXXXXXXHKSNDGKDALDG--KDSGTGSSEDGDRP 113
+N + +L ++ + T +P ++ + G++ +G K G + G
Sbjct: 906 SNKKGQLMRQKETTEKPDPKISKDLSEPRKRKFGEDRGEENRNGQRKRKKQGQGQGGAEV 965
Query: 114 QQRLDLLGQRTESEWSESRADSGPE 138
+LDLL ++ S++S+S A +GP+
Sbjct: 966 VDKLDLLIEKYRSKFSQSSAKTGPQ 990
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A++K R T S ++ K+N +P ++ L+ ++ QV WF N R ++K +
Sbjct: 87 AKKKRYHRHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKAQ 146
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R+K R T ++ + K+ P+P + +++ L+ + QV WF N R ++K +
Sbjct: 134 RKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
protodermal factor2 (GI:14276060) [Arabidopsis
thaliana]; similar to homeobox protein GI:1173621 from
[ Phalaenopsis sp.]
Length = 722
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
++K R T ++ + K+ P+P + ++ L+ + Q+ WF N R +LK ++
Sbjct: 32 KKKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLKAQH 91
Query: 67 K 67
+
Sbjct: 92 E 92
>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeodomain leucine zipper protein GI:5006851 from
[Oryza sativa]
Length = 206
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+G RR+ R T +N T +K LA K++ QV WF N R R K
Sbjct: 63 SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSK 122
Query: 64 -KENKMTWE 71
K +M E
Sbjct: 123 LKHTEMECE 131
>At2g21800.1 68415.m02591 expressed protein
Length = 475
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 102 SGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQHLPSRAPPG 161
SGTG+S + + G+R S S+S GPES + YE P++ P R G
Sbjct: 71 SGTGASSGREN-----NFFGKRVISLESDSEDSPGPESSKKYE-PVYTDSWKKPCRLEFG 124
Query: 162 STPASA 167
S+ A++
Sbjct: 125 SSDANS 130
>At4g10710.1 68417.m01751 transcriptional regulator-related similar to
chromatin-specific transcription elongation factor FACT
140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 97 LDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYE 144
LDG DS +G SE+ D+ + D + +ESE S ++S ES + E
Sbjct: 954 LDGSDSESGGSEESDKGYEPSD-VEVESESEDEASESESLVESDDDEE 1000
>At2g33780.1 68415.m04143 VQ motif-containing protein contains
PF05678: VQ motif
Length = 204
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 128 WSESRADSGPESPEPYERPIHPAYQHLPSRAPPGSTPASAKPRIWSLADM 177
+S+S +DS P + ER I +L R P +TP +PR+ SL M
Sbjct: 144 FSQSPSDSKPSFDDDQERSIKEKGFYL--RPSPSTTPRDTEPRLLSLFPM 191
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 120 LGQRTESEWSESRADSGPESPEPYERPIHPAYQH-LPSRAPPGSTPASAKP 169
LGQ S S +D P P P P P QH ++ PP PA P
Sbjct: 667 LGQPARSPPPISNSDKKPALPRPPPPPPPPPMQHSTVTKVPPPPPPAPPAP 717
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 88 HKSNDGKDALDGKDSGTGSSEDGDRPQQRLDLL------GQRTESEWSESRADSGPE 138
H+ D K DG++ GSS D + ++R D G S+ S+SR DSG E
Sbjct: 63 HQDRDSKRERDGRERTHGSSSDSSK-RKRWDEAGGLVNDGDHKSSKLSDSRHDSGGE 118
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 109 DGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIH 148
+G + + L + E E E + +SG ES E E+P+H
Sbjct: 992 NGSKAEAVLSESDEEKEEEEEERKEESGKESEEENEKPLH 1031
>At5g17320.1 68418.m02029 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar
to Roc1 (GI:1907210) [Oryza sativa]; contains Pfam
PF00046: Homeobox domain and Pfam PF01852: START domain
Length = 718
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
N +K R T + K+ P+P + ++ +L + Q+ WF N R + K
Sbjct: 23 NRHEKKGYHRHTNEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIKFWFQNKRTQAK 82
Query: 64 KENK 67
N+
Sbjct: 83 SHNE 86
>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
ZF-HD homeobox family protein hypothetical protein
T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
PATX:G3184285
Length = 220
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 88 HKSNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEP--YER 145
H N G A+DG S EDG + G E+ + G P Y R
Sbjct: 56 HAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNR 115
Query: 146 PIHP----AYQHLPSRAPPGSTPASA 167
P P Y HL S A P PA++
Sbjct: 116 PPQPHQPPGYLHLTSPAAPYRPPAAS 141
>At5g06710.1 68418.m00758 homeobox-leucine zipper protein 14 (HAT14)
/ HD-ZIP protein 14 contains similarity to homeodomain
leucine zipper protein
Length = 336
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 2 DLNGARRKNA--TRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANA 58
D NG+ RK +++ ++ L+ EH NP +KI LA + QV WF N
Sbjct: 183 DENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPK----QKIALAKQLNLRPRQVEVWFQNR 238
Query: 59 RRRLK 63
R R K
Sbjct: 239 RARTK 243
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 99 GKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHPAYQHLPSRA 158
G++ +GSS D RP + + L+ +E R S EP ERP +++ R
Sbjct: 243 GQEHSSGSSGDWKRPVEEVRLINLNNATE----RVQSSRRFAEP-ERPPSRSFEGSSHRT 297
Query: 159 PPGSTPASAKP 169
P ++KP
Sbjct: 298 PSTELTWASKP 308
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 137 PESPEPYERPIHPAYQHLPSRAPPGSTPASAKP 169
P +P+P +P+ P APPG +P + P
Sbjct: 3 PPTPDPSPKPVAPPGPSSKPVAPPGPSPCPSPP 35
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 140 PEPYER-PIHPAYQHLPSRAPPGSTPAS 166
P P+ R P PAYQ P R P + PA+
Sbjct: 111 PTPWRRAPTRPAYQQGPKRTKPMTLPAT 138
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 90 SNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIHP 149
+ +G +++ D D D Q+ L + ++ D G SP P P
Sbjct: 971 ARNGNSSIEATDMKIADVSDSDTSQKELQKVSSNAGAKMETETRDEGSSSPNPDNSP--E 1028
Query: 150 AYQHLPSRAPPGSTPASAKPRI 171
A + S GS A A I
Sbjct: 1029 ALNAVSSDHIEGSEEAMASDHI 1050
>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
thaliana]; contains Pfam PF00046: Homeobox domain and
Pfam PF01852: START domain
Length = 682
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R+ R T+ ++ + K+ P+P + +++ L + Q+ WF N R ++K +
Sbjct: 57 RKTKYHRHTSYQIQELESFFKECPHPNEKQRLELGKKLTLESKQIKFWFQNRRTQMKTQ 115
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 21 AWLNEHKKNPYPTKGEKIMLAIITKMTLT--QVSTWFANARRRLK 63
A+L E K + T K LA+ K+ LT QV WF N R R K
Sbjct: 140 AFLEETFKE-HNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 183
>At3g51330.1 68416.m05619 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 529
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 89 KSNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPIH 148
KS D K + G++ +G DR +R+ L +R++ ES + P PE E P
Sbjct: 418 KSVDFKINIIGQNFMSGYRIVFDR--ERMILGWKRSDCFEDESLESTTPPPPET-EAPSP 474
Query: 149 PAYQHLPSRAPP--GSTPASAKPR 170
A LPS PP +TP PR
Sbjct: 475 SASTPLPSLLPPPAAATPPQIDPR 498
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 131 SRADSGPESPEPYERPIHPAYQHLPSRAPPGSTPASAKP 169
S + S P P P P+ L S +PP S+P+SA P
Sbjct: 62 SLSPSSPPPPPPSSSPLSSLSPSL-SPSPPSSSPSSAPP 99
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 88 HKSNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYERPI 147
HK +D K +++ G S +D DR +QR ES+ S +S E +R
Sbjct: 663 HKESDKKRSVETSPVGYQSDKDRDRSKQRQRYKSDDPESDQSRK---GKRQSEENSDRET 719
Query: 148 HPAYQH 153
H +H
Sbjct: 720 HKERRH 725
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 137 PESPEPYERPIHPAYQHLPSRAPPGSTPASAKP 169
P SP P P P Y +L PP TP S+ P
Sbjct: 572 PHSPPPPHSPPPPIYPYL--SPPPPPTPVSSPP 602
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 89 KSNDGKDALDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPE 141
K N K +D K+S SSEDG + + + ES+ S S +S ES E
Sbjct: 163 KLNKAKKPVDVKESE--SSEDGGKESDTSNSEDVQKESDTSNSEDESASESEE 213
>At3g06220.1 68416.m00715 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 175
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 151 YQHLPSRAPPGSTPASAKPRIWSLADMASKD 181
Y+HLP R P + R+W +A M+ ++
Sbjct: 31 YEHLPRRLPKTAILTGTGGRVWKVAMMSKRE 61
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 126 SEWSESRADSGPESPEPYERPIHPAYQHLPSRAPPGSTP 164
S W+ + SG E P PY P+ P Y PP P
Sbjct: 201 SHWNTGSSVSG-EVPTPYGFPVDPHYHGWDYHPPPPPPP 238
>At2g20760.1 68415.m02440 expressed protein
Length = 338
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 90 SNDGKDALDGKDSGTG 105
+ DGKDA DGKD+ TG
Sbjct: 256 AKDGKDAKDGKDAKTG 271
>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
protein contains Pfam profile PF02809: Ubiquitin
interaction motif
Length = 599
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 97 LDGKDSGTGSSEDGDRPQQRLDLLGQRTESEWSESRADSGPESPEPYER 145
++ +++G+GS G+ P+ + L + + +E R P+SP P +
Sbjct: 31 IEEEETGSGSQSGGESPEAKSRRLQRELMAAAAEKRMVLFPKSPSPVNK 79
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.129 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,569,072
Number of Sequences: 28952
Number of extensions: 217527
Number of successful extensions: 686
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 74
length of query: 269
length of database: 12,070,560
effective HSP length: 80
effective length of query: 189
effective length of database: 9,754,400
effective search space: 1843581600
effective search space used: 1843581600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
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