Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000638-TA|BGIBMGA000638-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.26 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    30   0.78 
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    29   1.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   3.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   3.2  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   4.2  
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   5.5  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    27   7.3  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.7  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 420 FPRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           FP H +  +  P    HH P  H P  P H+E      P
Sbjct: 197 FPAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPP 235



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQP-HHNEG 452
           P+H +    D     HH P  H P  P HH  G
Sbjct: 185 PKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPG 217



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 224 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 237 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 250 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 263 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 276 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 289 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 302 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
           P H +  +  P    HH P  H P  P H+E      P
Sbjct: 211 PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 301 IPASKPKIWSLAD--TAACKTPPPAAQPWPQHSYGPPE 336
           + AS+P +W+L +  TA CK PP +       +Y PP+
Sbjct: 12  VAASRPDVWTLVNQATAECKVPPVSLSQ-GFFNYNPPK 48


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 251 LNGHHARGRGVAPQSDEERKGDEMLQGMHHQ 281
           LN +     G A  SDEE   DE L+G+H++
Sbjct: 111 LNAYSNEDSGAASLSDEESVDDENLRGLHYK 141


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 306 PKIWSLADTAACKTPPPA-AQPWPQHSYGPPERAAP 340
           PK+  +  ++A   PP A A P PQ    PP  A P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 294 TSDCGVPIPASKPKIWSLADTAACKTPPPAAQP--WPQHSYGPPERAAPIDGSSN 346
           +S   VP  A+   I    D+    +P P   P  W +HS   P R+  ++ S++
Sbjct: 352 SSQFSVPFNAAAENINDTPDSVLANSPTPRHLPYTWSRHSTSGPSRSTVLNPSTS 406


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 203 LPKDLSSSWIVSFMRIFRRKVTYFVVEWRAAGLVGKCEINAQ 244
           LP  L  + +  + R FRRK+ YF+ +     L G+C I  +
Sbjct: 378 LPSSLDQN-VPQYKRDFRRKLIYFLSQPALHPLPGQCHIKVR 418


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 15  RRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 74
           +R+N +  +   ++AW+ E KKN +PT+   I    +    L Q + +F    +   K+ 
Sbjct: 93  KRRNISINTPEEIEAWIQERKKN-WPTE-SNIRSKQLLNTQLEQENIFFLQFMKLYLKKM 150

Query: 75  KMTWEP 80
            M  +P
Sbjct: 151 GMVVKP 156


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 198 PYFMFLPKDLSSSWIVSFMRIFRRKVTYFVVEWRAAGLVGKCEINAQLK 246
           P+  + PKDL     V    IFR +  + ++ W A G +     N++LK
Sbjct: 49  PFQKYRPKDLK----VQRKSIFRLRYIFLILGWLAIGFLSYKIANSRLK 93


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 432 YHNPHHAPTNHQPNQPHHN 450
           +H+PH  P +H P+   HN
Sbjct: 168 HHHPHTRPPHHPPHPHFHN 186


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 299  VPIPASKPKIWSLADTAACKTPPPAAQPWPQHSYGPPERAAPIDG 343
            VP+P+  P +   +  A     P  A P P+ S   P   AP  G
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,939
Number of Sequences: 5004
Number of extensions: 73060
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 28
length of query: 462
length of database: 2,362,478
effective HSP length: 75
effective length of query: 387
effective length of database: 1,987,178
effective search space: 769037886
effective search space used: 769037886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)