Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000638-TA|BGIBMGA000638-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
         (462 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    39   8e-05
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    37   4e-04
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    36   5e-04
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    34   0.003
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    33   0.004
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    30   0.036
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        29   0.062
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    29   0.082
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.44 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   9.4  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 39.1 bits (87), Expect = 8e-05
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 10 YDLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
          +D    R+  T  +   L A  N+ K   Y +  E++ LA+   +T TQV  WF N R +
Sbjct: 3  WDRREARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 62

Query: 70 LKKEN 74
           KK+N
Sbjct: 63 WKKQN 67


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 16  RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 75
           R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R + KKENK
Sbjct: 274 RQTYTRYQTLELE---KEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 330

Query: 76  MTWEP 80
               P
Sbjct: 331 SKGTP 335


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 36.3 bits (80), Expect = 5e-04
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 8  AGYDLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 67
          A  ++  +R + TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R
Sbjct: 4  ANGEVKRQRTSYTRYQTLELE---KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 60

Query: 68 RRLKKENKM 76
           + KKE+KM
Sbjct: 61 MKWKKEHKM 69


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 74
          R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R + KKEN
Sbjct: 12 RQTYTRYQTLELE---KEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 33.5 bits (73), Expect = 0.004
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 73
          R+  TR  T  L+    E   N Y T+  +I +A    +T  Q+  WF N R +LKKE
Sbjct: 12 RQTYTRFQTLELE---KEFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 66


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 30.3 bits (65), Expect = 0.036
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
          RK  T  +T  L +   + ++  Y T  E+   +    +T TQV  WF N R + K+
Sbjct: 10 RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 66


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 29.5 bits (63), Expect = 0.062
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 35 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 75
          ++  Y    E+  LA    +T TQV  WF N R + KK  K
Sbjct: 1  QRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 41


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 29.1 bits (62), Expect = 0.082
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
          ++  T  S   L     E  +N Y T+  +  L+    +T  Q+  WF N R ++KK
Sbjct: 21 KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 33 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
          E  +N Y T+  +  L+    +   Q+  WF N R ++KK
Sbjct: 38 EFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKK 77


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 435 PHHAPTNHQPNQPHHNEGSA 454
           P + P  H P+Q H + GS+
Sbjct: 314 PSYHPHQHHPSQYHPHRGSS 333


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 409 PLGSGGGSGYCFPRHQQSPQ 428
           P+GSGG     +P    SPQ
Sbjct: 385 PIGSGGSFPSLYPMATTSPQ 404


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,122
Number of Sequences: 429
Number of extensions: 5564
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 462
length of database: 140,377
effective HSP length: 60
effective length of query: 402
effective length of database: 114,637
effective search space: 46084074
effective search space used: 46084074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)