Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000638-TA|BGIBMGA000638-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.26
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 30 0.78
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch... 29 1.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 3.2
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 3.2
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 4.2
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 5.5
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 27 7.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 9.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.7
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 420 FPRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
FP H + + P HH P H P P H+E P
Sbjct: 197 FPAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPP 235
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQP-HHNEG 452
P+H + D HH P H P P HH G
Sbjct: 185 PKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPG 217
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 224 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 237 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 250 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 263 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 276 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 289 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 302 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSAAFKP 458
P H + + P HH P H P P H+E P
Sbjct: 211 PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 301 IPASKPKIWSLAD--TAACKTPPPAAQPWPQHSYGPPE 336
+ AS+P +W+L + TA CK PP + +Y PP+
Sbjct: 12 VAASRPDVWTLVNQATAECKVPPVSLSQ-GFFNYNPPK 48
>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 251 LNGHHARGRGVAPQSDEERKGDEMLQGMHHQ 281
LN + G A SDEE DE L+G+H++
Sbjct: 111 LNAYSNEDSGAASLSDEESVDDENLRGLHYK 141
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 306 PKIWSLADTAACKTPPPA-AQPWPQHSYGPPERAAP 340
PK+ + ++A PP A A P PQ PP A P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 294 TSDCGVPIPASKPKIWSLADTAACKTPPPAAQP--WPQHSYGPPERAAPIDGSSN 346
+S VP A+ I D+ +P P P W +HS P R+ ++ S++
Sbjct: 352 SSQFSVPFNAAAENINDTPDSVLANSPTPRHLPYTWSRHSTSGPSRSTVLNPSTS 406
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 203 LPKDLSSSWIVSFMRIFRRKVTYFVVEWRAAGLVGKCEINAQ 244
LP L + + + R FRRK+ YF+ + L G+C I +
Sbjct: 378 LPSSLDQN-VPQYKRDFRRKLIYFLSQPALHPLPGQCHIKVR 418
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 15 RRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 74
+R+N + + ++AW+ E KKN +PT+ I + L Q + +F + K+
Sbjct: 93 KRRNISINTPEEIEAWIQERKKN-WPTE-SNIRSKQLLNTQLEQENIFFLQFMKLYLKKM 150
Query: 75 KMTWEP 80
M +P
Sbjct: 151 GMVVKP 156
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 198 PYFMFLPKDLSSSWIVSFMRIFRRKVTYFVVEWRAAGLVGKCEINAQLK 246
P+ + PKDL V IFR + + ++ W A G + N++LK
Sbjct: 49 PFQKYRPKDLK----VQRKSIFRLRYIFLILGWLAIGFLSYKIANSRLK 93
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 432 YHNPHHAPTNHQPNQPHHN 450
+H+PH P +H P+ HN
Sbjct: 168 HHHPHTRPPHHPPHPHFHN 186
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 299 VPIPASKPKIWSLADTAACKTPPPAAQPWPQHSYGPPERAAPIDG 343
VP+P+ P + + A P A P P+ S P AP G
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,939
Number of Sequences: 5004
Number of extensions: 73060
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 28
length of query: 462
length of database: 2,362,478
effective HSP length: 75
effective length of query: 387
effective length of database: 1,987,178
effective search space: 769037886
effective search space used: 769037886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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