Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000638-TA|BGIBMGA000638-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like, IPR003893|Iroquois-class homeodomain
protein
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 57 3e-08
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ... 55 9e-08
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 54 2e-07
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 54 2e-07
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 54 2e-07
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 54 2e-07
At2g27990.1 68415.m03392 homeodomain-containing protein 54 2e-07
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 53 3e-07
At2g27220.1 68415.m03271 homeodomain-containing protein 53 3e-07
At2g16400.1 68415.m01877 homeodomain-containing protein 53 3e-07
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 52 6e-07
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 52 6e-07
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to... 52 1e-06
At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT... 52 1e-06
At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6) n... 51 1e-06
At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6) n... 51 1e-06
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 51 2e-06
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 51 2e-06
At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT... 50 3e-06
At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT... 50 4e-06
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7... 48 2e-05
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 45 9e-05
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 45 1e-04
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 43 5e-04
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 33 0.30
At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to ... 33 0.30
At5g59050.2 68418.m07399 expressed protein 33 0.53
At5g59050.1 68418.m07398 expressed protein 33 0.53
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 32 0.70
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 32 0.70
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 32 0.70
At4g03250.1 68417.m00444 homeobox-leucine zipper family protein ... 32 0.92
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 32 0.92
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 32 0.92
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 31 1.2
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 31 1.2
At3g12420.1 68416.m01547 hypothetical protein 31 1.2
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 31 1.2
At1g29120.2 68414.m03565 expressed protein 31 1.6
At1g29120.1 68414.m03564 expressed protein 31 1.6
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 31 2.1
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 30 2.8
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 2.8
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 3.7
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 30 3.7
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 30 3.7
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 30 3.7
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 29 4.9
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 29 4.9
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3... 29 4.9
At1g73360.1 68414.m08491 homeobox-leucine zipper family protein ... 29 4.9
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 4.9
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 29 6.5
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 29 6.5
At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1... 29 8.6
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 56.8 bits (131), Expect = 3e-08
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ S L+AWL EH +PYP + EKIMLA T ++ QV+ WF NAR RL K
Sbjct: 355 QRGLPENSVSVLRAWLFEHFLHPYPKESEKIMLAKQTGLSKNQVANWFINARVRLWK 411
>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
identical to BEL1-like homeodomain 3 (GI:13877515)
[Arabidopsis thaliana]
Length = 524
Score = 55.2 bits (127), Expect = 9e-08
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ S L+AWL EH +PYP + EKIML+ T ++ QV+ WF NAR RL K
Sbjct: 350 QRGLPENSVSILRAWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRLWK 406
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 54.4 bits (125), Expect = 2e-07
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ S L+AWL EH NPYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 484
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 54.4 bits (125), Expect = 2e-07
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ S L+AWL EH NPYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 484
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 54.0 bits (124), Expect = 2e-07
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ + L+AWL EH +PYP +K MLA T +T +QVS WF NAR RL K
Sbjct: 389 QRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 54.0 bits (124), Expect = 2e-07
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ + L+AWL EH +PYP +K MLA T +T +QVS WF NAR RL K
Sbjct: 389 QRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWK 445
>At2g27990.1 68415.m03392 homeodomain-containing protein
Length = 584
Score = 54.0 bits (124), Expect = 2e-07
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ + L+AWL +H +PYPT +K MLA T ++ QVS WF NAR RL K
Sbjct: 428 QRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWK 484
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Query: 27 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
L+AWL EH +PYP +KIMLA T ++ QVS WF NAR RL K
Sbjct: 329 LRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWK 374
>At2g27220.1 68415.m03271 homeodomain-containing protein
Length = 431
Score = 53.2 bits (122), Expect = 3e-07
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 2 QLKRYGAGYDLAARRKNATRESTG-------TLKAWLNEHKKNPYPTKGEKIMLAIITKM 54
QLK+ G +A NA R G L++WL EH +PYP +K+MLA T +
Sbjct: 214 QLKKLGK---MAHHHSNAWRPQRGLPEKVVSVLRSWLFEHFLHPYPRDLDKVMLAKQTGL 270
Query: 55 TLTQVSTWFANARRRLKK 72
T +QVS WF NAR R+ K
Sbjct: 271 TKSQVSNWFINARVRMWK 288
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Query: 27 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
L+AWL EH +PYP +KIMLA T ++ QVS WF NAR RL K
Sbjct: 300 LRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWK 345
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 52.4 bits (120), Expect = 6e-07
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 27 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
L+AWL +H +PYPT +K+MLA T ++ QVS WF NAR R+ K
Sbjct: 363 LRAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWK 408
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 52.4 bits (120), Expect = 6e-07
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 16 RKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
++ S L+AWL EH +PYP+ +K +LA T ++ QVS WF NAR RL K
Sbjct: 501 QRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 557
>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
cDNA homeobox protein (BEL1) GI:28202124
Length = 611
Score = 51.6 bits (118), Expect = 1e-06
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 26 TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
TL+AWL EH +PYP+ +K +LA T ++ +QVS WF NAR RL K
Sbjct: 405 TLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 451
>At1g70510.1 68414.m08115 homeobox protein knotted-1 like 2 (KNAT2)
(K1) identical to homeobox protein knotted-1 like 2 (
KNAT2/ ATK1) SP: from [Arabidopsis thaliana]
Length = 310
Score = 51.6 bits (118), Expect = 1e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 21 RESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
RE+ L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 239 REARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKR 287
>At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 326
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 21 RESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
RE+ L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 254 REARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 302
>At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 327
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 21 RESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
RE+ L W N H K PYPT+G+KI LA T + Q++ WF N R+R
Sbjct: 255 REARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKR 303
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 50.8 bits (116), Expect = 2e-06
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 22 ESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
++T LKAW H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 354 DTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 401
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 50.8 bits (116), Expect = 2e-06
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 QLKRYGAGYDLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVST 61
QLKR + + ++ +S L+ W+ ++ +PYP EK +LAI + +T +QVS
Sbjct: 364 QLKR--KNHQIWRPQRGLPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTRSQVSN 421
Query: 62 WFANARRRLKK 72
WF NAR RL K
Sbjct: 422 WFINARVRLWK 432
>At4g32040.1 68417.m04561 homeobox protein knotted-1 like 5 (KNAT5)
/ homeodomain containing protein 1 (H1) identical to
homeobox protein knotted-1 like 5 (KNAT5) SP:P48002 from
[Arabidopsis thaliana]
Length = 383
Score = 50.0 bits (114), Expect = 3e-06
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 22 ESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 77
++T LK W H K PYPT+ +K L T + L Q++ WF N R+R N T
Sbjct: 313 DTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSST 368
>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
identical to homeobox protein knotted-1 like 4 ( KNAT4)
SP:P48001 from [Arabidopsis thaliana]
Length = 393
Score = 49.6 bits (113), Expect = 4e-06
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 22 ESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
++T LK+W H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 318 DTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 365
>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
contains Pfam profiles: PF03789 ELK domain, PF03790
KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
protein HD1 SP:P46606 from [Brassica napus]; identical
to cDNA homeodomain transcription factor KNAT7 (KNAT7)
GI:11878229
Length = 291
Score = 47.6 bits (108), Expect = 2e-05
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 22 ESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
++T LK W +H K PYPT+ +K L T + L Q++ WF N R+R
Sbjct: 226 DTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 45.2 bits (102), Expect = 9e-05
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 23 STGTLKAWLNEHKKNP-------YPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
S L+AWL +H +P YP + EK++LA T ++ QVS WF NAR RL K
Sbjct: 213 SVAILRAWLFQHFLHPSVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWK 269
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 44.8 bits (101), Expect = 1e-04
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 11 DLAARRKNAT--RESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 68
+L+ ++K +E+ L W H K PYP++ EK+ LA T + Q++ WF N R+
Sbjct: 298 ELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRK 357
Query: 69 R 69
R
Sbjct: 358 R 358
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 42.7 bits (96), Expect = 5e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 21 RESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 69
+E+ L W + H K PYP++ +K+ LA T + Q++ WF N R+R
Sbjct: 293 KEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKR 341
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 33.5 bits (73), Expect = 0.30
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 410 LGSGGGSGYCFPR-HQQSPQRD-PYHN-PHHA--PTNHQPNQPHH 449
LGSG GY + HQ PQ+ P N PHH P++H P PHH
Sbjct: 563 LGSGQQQGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHH 607
>At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to
Homeobox protein FWA (SP:Q9FVI6) [Arabidopsis
thaliana]; contains Pfam profiles PF01852: START domain
and PF00046: Homeobox domain; identical to cDNA
homeodomain-containing transcription factor FWA
(FWA)GI:13506819
Length = 686
Score = 33.5 bits (73), Expect = 0.30
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 32 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 74
N + +NP+PT+ ++ L M + QV WF N +R L+K N
Sbjct: 57 NFYMENPHPTEEQRYELGQRLNMGVNQVKNWFQN-KRNLEKIN 98
>At5g59050.2 68418.m07399 expressed protein
Length = 193
Score = 32.7 bits (71), Expect = 0.53
Identities = 14/67 (20%), Positives = 32/67 (47%)
Query: 262 APQSDEERKGDEMLQGMHHQLLSYGIKEESKRTSDCGVPIPASKPKIWSLADTAACKTPP 321
+P++ E + DE + + Q+ +Y ++++ K CG + + +WS +
Sbjct: 43 SPKAKNEDEEDEYITELTRQMTNYMLQDDEKHQKSCGSGSGSPQSTLWSPFASGLSSPIG 102
Query: 322 PAAQPWP 328
P+ +P P
Sbjct: 103 PSREPSP 109
>At5g59050.1 68418.m07398 expressed protein
Length = 312
Score = 32.7 bits (71), Expect = 0.53
Identities = 14/67 (20%), Positives = 32/67 (47%)
Query: 262 APQSDEERKGDEMLQGMHHQLLSYGIKEESKRTSDCGVPIPASKPKIWSLADTAACKTPP 321
+P++ E + DE + + Q+ +Y ++++ K CG + + +WS +
Sbjct: 43 SPKAKNEDEEDEYITELTRQMTNYMLQDDEKHQKSCGSGSGSPQSTLWSPFASGLSSPIG 102
Query: 322 PAAQPWP 328
P+ +P P
Sbjct: 103 PSREPSP 109
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.70
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 300 PIPASKPKIWSLADTAACKTPPPAAQPWPQHSYGPPERAAP 340
P+P PK ++ A PPP P S GPP P
Sbjct: 351 PLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPPP 391
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.70
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 300 PIPASKPKIWSLADTAACKTPPPAAQPWPQHSYGPPERAAP 340
P+P PK ++ A PPP P S GPP P
Sbjct: 351 PLPPEPPKFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPPP 391
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 32.3 bits (70), Expect = 0.70
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 13 AARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 72
AA++K R + ++ K+N +P ++ L+ ++ QV WF N R ++K
Sbjct: 86 AAKKKRYHRHTASQIQQMEALFKENAHPDTKTRLRLSKKLGLSPIQVKFWFQNKRTQIKA 145
Query: 73 ENKMTWEPKNKA 84
+ + K KA
Sbjct: 146 QQSRSDNAKLKA 157
>At4g03250.1 68417.m00444 homeobox-leucine zipper family protein
similar to homeobox transcription factor Hox7
[Lycopersicon peruvianum] GI:19486; contains Pfam
PF00046: Homeobox domain
Length = 476
Score = 31.9 bits (69), Expect = 0.92
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 27 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 75
L+ + NEHK YPT+ K LA +T QVS WF + R + K+ K
Sbjct: 3 LENFYNEHK---YPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHVK 48
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 31.9 bits (69), Expect = 0.92
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 416 SGYCFPRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSA 454
S Y + Q+P R PY + HH P + P Q HH S+
Sbjct: 192 SPYYYGYSLQAP-RVPYQHHHHLPQPYNPQQHHHQRFSS 229
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.9 bits (69), Expect = 0.92
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 416 SGYCFPRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSA 454
S Y + Q+P R PY + HH P + P Q HH S+
Sbjct: 192 SPYYYGYSLQAP-RVPYQHHHHLPQPYNPQQHHHQRFSS 229
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome
deletion transcript 9 [Homo sapiens]; contains Pfam
PF02791: DDT domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 7 GAGYDLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 66
G G + ++RK T L+ N + PYP++ + L++ ++ Q+ WF +
Sbjct: 12 GCGGESKSKRKMKTAAQLEVLE---NTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCH- 67
Query: 67 RRRLKKENKMT 77
RRLK+ T
Sbjct: 68 -RRLKERKSTT 77
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 35 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 67
++N YP K K LA +MT+ QV+ WF + R
Sbjct: 634 QENQYPDKATKESLAKELQMTVKQVNNWFKHRR 666
>At3g12420.1 68416.m01547 hypothetical protein
Length = 308
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 404 PSVANPLGSGGGSGYCFP-RHQQSPQRDPYHNPHHAPTNHQPNQP 447
P PL G G + P + +P D Y++ HH P ++ PN P
Sbjct: 51 PYYLQPLVVGVGVQWTPPVSYDANPPPDRYYSDHHPPRSYDPNPP 95
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 302 PASKPKIWSLADTAACKTPPPAAQPWPQHSYGPPERA-APIDGSSN 346
PAS PK SLAD+ + PPP + SY P AP D S+
Sbjct: 131 PASSPKPESLADSPSPPPPPPQPESPSSPSYPEPAPVPAPSDDDSD 176
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 31.1 bits (67), Expect = 1.6
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 150 VRNRFSLPDFLFVV---KWAAPRPKFHITRLPFVGRTGCHAEVAFGLSDELPYFMFLPKD 206
VR R LP L V K AAP F FVGRTG + G +D+ P + + D
Sbjct: 236 VRGRKQLPFLLGVPILEKLAAPIAPF------FVGRTGSQLFLTDGKADKPPLLLRMASD 289
Query: 207 LSSSWIVSFMRIFRRKVTY------FVVEWRAAGLVGKCEI 241
+S + FR ++ Y +V WR + + + E+
Sbjct: 290 GEDLKFLSALGAFRSRIIYANVSYDHMVGWRTSSIRRETEL 330
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 31.1 bits (67), Expect = 1.6
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 150 VRNRFSLPDFLFVV---KWAAPRPKFHITRLPFVGRTGCHAEVAFGLSDELPYFMFLPKD 206
VR R LP L V K AAP F FVGRTG + G +D+ P + + D
Sbjct: 236 VRGRKQLPFLLGVPILEKLAAPIAPF------FVGRTGSQLFLTDGKADKPPLLLRMASD 289
Query: 207 LSSSWIVSFMRIFRRKVTY------FVVEWRAAGLVGKCEI 241
+S + FR ++ Y +V WR + + + E+
Sbjct: 290 GEDLKFLSALGAFRSRIIYANVSYDHMVGWRTSSIRRETEL 330
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 253 GHHARGRGVAPQSDEERKGDEMLQGMHHQLLSYGIKEESKRTSD 296
G ARG G AP+ D+ RKGD L + ++EE +R D
Sbjct: 326 GMLARGTGAAPRVDDLRKGDRA-----SYLREFDLREEERRRED 364
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 288 KEESKRTSDCGVPIPASKPKIWSLADTAACKTPPPAAQ-PWPQHSYGPPERAAPIDGS 344
K+E +S P + P + L + K P Q P P HS GPP A + S
Sbjct: 500 KDEESTSSSPASPSISFLPTLHPLTSSQPKKASPQCPQSPTPVHSNGPPSAEAAVTSS 557
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 30.3 bits (65), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 300 PIPASKPKIWSLADTAACKTPP--PAAQPWPQHSYGPPERAAP 340
P P KP C +PP PA P P +GPP + AP
Sbjct: 81 PPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAP 123
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 295 SDCGVPIPASKPKIWSLADTAACKTPPPAAQPWP 328
S C P P +PK + C +PPP QP P
Sbjct: 29 SPCPSPPPKPQPKPPPAPSPSPCPSPPPKPQPKP 62
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHNEGSA 454
P H SP P H+P HAP++ + P H+ A
Sbjct: 229 PSH--SPAHTPSHSPAHAPSHSPAHAPSHSPAHA 260
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHN 450
P H SP P H+P HAP++ + P H+
Sbjct: 245 PSH--SPAHAPSHSPAHAPSHSPAHSPSHS 272
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 421 PRHQQSPQRDPYHNPHHAPTNHQPNQPHHN 450
P H SP P H+P HAP++ + P H+
Sbjct: 237 PSH--SPAHAPSHSPAHAPSHSPAHAPSHS 264
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 14 ARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 73
A++K R + ++ K+NP+P ++ L+ + QV WF N R ++K +
Sbjct: 110 AKKKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMKAQ 169
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 29.9 bits (64), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 319 TPPPAAQPWPQHSYGPPERAAPIDGSSN 346
TPPP A P P H + + P+D S N
Sbjct: 55 TPPPYASPPPPHQHTSGSHSGPLDYSHN 82
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 15 RRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 71
+RK R +T ++ K+ P+P + ++ L+ + QV WF N R ++K
Sbjct: 101 KRKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 157
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 9 GYDLAARRKNATRESTGTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANAR 67
G + + ++ +++ + L+ EH NP +K+ LA +T QV WF N R
Sbjct: 124 GGETSRKKLRLSKDQSAFLEETFKEHNTLNPK----QKLALAKKLNLTARQVEVWFQNRR 179
Query: 68 RRLK 71
R K
Sbjct: 180 ARTK 183
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 11 DLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 70
D R+K R + ++ + K+ P+P + +++ L+ + QV WF N R ++
Sbjct: 130 DKPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM 189
Query: 71 KKE 73
K +
Sbjct: 190 KTQ 192
>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
HD-ZIP protein 3 identical to Homeobox-leucine zipper
protein HAT3 (SP:P46602) [Arabidopsis thaliana]
Length = 315
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 7 GAGYDLAARRKNATRESTGTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFAN 65
G G D + ++ ++E L+ EH NP +K+ LA + QV WF N
Sbjct: 154 GNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPK----QKMALAKQLNLRTRQVEVWFQN 209
Query: 66 ARRRLK 71
R R K
Sbjct: 210 RRARTK 215
>At1g73360.1 68414.m08491 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
protodermal factor2 (GI:14276060) [Arabidopsis
thaliana]; similar to homeobox protein GI:1173621 from
[ Phalaenopsis sp.]
Length = 722
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 9 GYDLAARRKNATRESTGTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 68
G + ++K R + ++ + K+ P+P + ++ L+ + Q+ WF N R
Sbjct: 26 GSETDRKKKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRT 85
Query: 69 RLKKENK 75
+LK +++
Sbjct: 86 QLKAQHE 92
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 320 PPPAAQPWPQHSYGPPERAAP 340
PPPAA P+PQ GP R AP
Sbjct: 424 PPPAAYPYPQQP-GPGSRPAP 443
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 29.1 bits (62), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 432 YHNPHHAPTNHQPNQPHHN 450
+HN HH P +HQ NQ H+
Sbjct: 540 HHNGHHHPFDHQMNQSAHH 558
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 404 PSVANPLGSGGGSGYCFPRHQQSPQRDPYHNPHHAPTNHQPN 445
PS+ +P+ + G + P Q D +H+ HH N P+
Sbjct: 326 PSMYDPMANNNGGCFQIPHDQSMFVNDHHHHHHHHHQNWVPD 367
>At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1) /
HD-ZIP protein 1 identical to Homeobox-leucine zipper
protein HAT1 (SP:P46600) [Arabidopsis thaliana]
Length = 282
Score = 28.7 bits (61), Expect = 8.6
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 9 GYDLAARRKNATRESTGTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANAR 67
G + ++ +++ + L+ EH NP +K+ LA +T QV WF N R
Sbjct: 129 GGETCRKKLRLSKDQSAVLEDTFKEHNTLNPK----QKLALAKKLGLTARQVEVWFQNRR 184
Query: 68 RRLK 71
R K
Sbjct: 185 ARTK 188
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.134 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,705
Number of Sequences: 28952
Number of extensions: 419851
Number of successful extensions: 1413
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 83
length of query: 462
length of database: 12,070,560
effective HSP length: 84
effective length of query: 378
effective length of database: 9,638,592
effective search space: 3643387776
effective search space used: 3643387776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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