Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    68   5e-14
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.0  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 67.7 bits (158), Expect = 5e-14
 Identities = 31/38 (81%), Positives = 33/38 (86%), Gaps = 4/38 (10%)

Query: 89  YPRLSSAAVGVYGTPYPSTDQNPYPSIGVDSSAFYSPL 126
           YPR    +VGVYG PYPSTDQNPYPSIGV+SSAFYSPL
Sbjct: 3   YPR----SVGVYGAPYPSTDQNPYPSIGVESSAFYSPL 36


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 105 PSTDQNPYPSIGVDSSAFYSPLVPTDRLPFARIEGKVYRSRY 146
           P+  Q P P  G  ++A  SPL P  R  F R  G+   +RY
Sbjct: 214 PNQGQQP-P--GNTAAALPSPLYPWMRSQFERKRGRQTYTRY 252


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 105 PSTDQNPYPSIGVDSSAFYSPLVPTDRLPFARIEGKVYRSRY 146
           P+  Q P P  G  ++A  SPL P  R  F R  G+   +RY
Sbjct: 216 PNQGQQP-P--GNTAAALPSPLYPWMRSQFERKRGRQTYTRY 254


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,848
Number of Sequences: 317
Number of extensions: 1644
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 187
length of database: 114,650
effective HSP length: 53
effective length of query: 134
effective length of database: 97,849
effective search space: 13111766
effective search space used: 13111766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)