Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   3.0  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.9  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 79  YDGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYPSIGVDSSAFYSPLVPTDRLPFARIE 138
           YD     L S    ++  V  Y   YP T +N    I  DS  F S +V  D+  F    
Sbjct: 95  YDPLAFQLLSSHEYNTDDVVFYDVDYPETIENRVQMIRSDS--FLSSIVLEDK-EFDLDG 151

Query: 139 GKVYRSRYNEFG 150
            +++   Y+ FG
Sbjct: 152 TEIHTKNYHSFG 163


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 123 YSPLVPTDRLPFARIEGKVYRSRYNEFGYSG--VACEPESNRSWCAQP 168
           Y P++P+  + F  I+ ++      +       +   P S  SW A P
Sbjct: 432 YCPIIPSSEVNFCSIDNRIIAGMNRDLALDSDIIGNSPPSFDSWTAVP 479


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 111 PYPSIGVDSSAFYSPLVPTDRLP 133
           P  SI   S+AFY P  P +  P
Sbjct: 246 PSTSISASSNAFYKPAAPDNERP 268


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,907
Number of Sequences: 5004
Number of extensions: 28517
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 3
length of query: 187
length of database: 2,362,478
effective HSP length: 69
effective length of query: 118
effective length of database: 2,017,202
effective search space: 238029836
effective search space used: 238029836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)