Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22070.1 68416.m02785 proline-rich family protein contains pr...    29   1.5  
At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4...    27   5.9  

>At3g22070.1 68416.m02785 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 178

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 75  CSCQYDGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYPSIGVDSSAFYSPLVPTD 130
           CS  Y  +    +S    SS++   + TP+P+ + NP P+  V  S   SP  PTD
Sbjct: 38  CSGDYCSSSTDPSSSSSSSSSSTSPFITPFPNPNPNPNPNPPVLGS---SPPSPTD 90


>At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4)
           identical to putative receptor protein kinase ACR4
           [Arabidopsis thaliana] GI:20302590; contains protein
           kinase domain, Pfam:PF00069
          Length = 895

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 57  CCDTPRPIITDPVSGQTVCSCQYDGARLALTSYPRLSSAAVGVY 100
           C DTP P  T  +S Q    C++ G+ + L   P  +S   G+Y
Sbjct: 342 CIDTPCPPGTHELSNQENSPCKFTGSHICL---PCSTSCPPGMY 382


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,260
Number of Sequences: 28952
Number of extensions: 151873
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 2
length of query: 187
length of database: 12,070,560
effective HSP length: 77
effective length of query: 110
effective length of database: 9,841,256
effective search space: 1082538160
effective search space used: 1082538160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)