GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0563 - 30266533-30266846,30266935-30267274                       32   0.25 
01_06_0406 + 29113033-29113119,29113250-29113309,29114104-291141...    30   1.00 
05_05_0012 - 21505108-21505150,21505545-21505903                       29   3.0  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    28   5.3  
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697...    27   9.3  
01_06_1190 + 35248783-35248835,35249218-35249550,35251288-352515...    27   9.3  

>01_06_0563 - 30266533-30266846,30266935-30267274
          Length = 217

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 80  DGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYPSIGVDSSAFYSPLVPTDRLPFARIEG 139
           D    A +S P  ++A      +PY  T   P PS   D++    P+ P   LPF  +EG
Sbjct: 36  DNTARAPSSSPSAATATAPA-PSPYTDTAMAPAPSSSNDTAV--EPVAPPP-LPFIIVEG 91

Query: 140 KVYRSRYNEFGYS 152
            VY       GYS
Sbjct: 92  VVYCKTCKSRGYS 104


>01_06_0406 +
           29113033-29113119,29113250-29113309,29114104-29114186,
           29114394-29114556,29114695-29114824,29115016-29115174,
           29115295-29115464,29115590-29115670,29116492-29116536,
           29116597-29117346,29117424-29117654
          Length = 652

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 92  LSSAAVGVYGTPYPSTDQ--NPYPSI 115
           ++  A GVYG PYP  DQ  NP P +
Sbjct: 425 MAEHATGVYGHPYPRVDQYGNPVPPV 450


>05_05_0012 - 21505108-21505150,21505545-21505903
          Length = 133

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 115 IGVDSSAFYSPLVPTDRLPFARIEGKVYRS 144
           +G  SS++ +PLVP+ R P+++ E KV+ S
Sbjct: 8   MGGSSSSWVAPLVPSSR-PWSKAEDKVFES 36


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 101 GTPYPSTDQNPYPSIGVDSSAFYSPLVPTDRLPFAR 136
           G  +P   + PYP + +     Y+ +V  +RL F+R
Sbjct: 276 GAAFPMVSKEPYPYLSISVKGLYTGMVEIERL-FSR 310


>02_02_0119 +
           6978697-6979045,6979519-6979581,6979757-6979866,
           6979969-6980154,6980266-6980361,6980493-6980564,
           6980798-6980909,6982448-6982534,6982680-6983872
          Length = 755

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 85  ALTSYPRLSSAAVGVYGTPYPST--DQNPYPSIGVDSSAFYSP----LVPTDRLPFARIE 138
           A +SYP   SA    YG P P T     P P  G    ++ +P      P +  P+ +  
Sbjct: 592 AASSYPVQGSAPQSGYGAPPPQTGYGTQPQPQGGYSQGSYGAPPQGQKAPPNTSPYGQAP 651

Query: 139 GK-VYRSRYNEFGYS 152
                   Y ++GYS
Sbjct: 652 PPGSAPGGYGQYGYS 666


>01_06_1190 +
           35248783-35248835,35249218-35249550,35251288-35251588,
           35251680-35252120
          Length = 375

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 86  LTSYPRLSSAAVGVYGTPYPSTDQNPYPSIGVDSSAFY 123
           L   P +SSA+  VY    PST    Y S+     A Y
Sbjct: 336 LAGAPVISSASPPVYPAGQPSTSTTDYSSLNTSEHAAY 373


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,775,335
Number of Sequences: 37544
Number of extensions: 201780
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)