GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.012
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             28   4.1  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      27   7.2  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 56  SCCDTPRPIITDPVSGQTVCSCQYDGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYP-S 114
           SCCD+ R +  D + G +VC CQ+D          R++S  V V   P P+  +  +   
Sbjct: 36  SCCDSVRQV-HDGMPGHSVCPCQFD-----RVLQHRVASVPVSV--LPRPAFGEAGFSLG 87

Query: 115 IGVDSSAFYSPL 126
            G   SAFYSPL
Sbjct: 88  SGTGLSAFYSPL 99


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 68   PVSGQTVCSCQYDGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYPSIG 116
            P + +  CSC         T YPR     V VY +  PST ++ +P  G
Sbjct: 1324 PKNTRPPCSC----LPFVFTLYPRTRVPPVRVYPSCLPSTSEHAFPLFG 1368


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 61  PRPIITDPVSGQTVCSCQYDGARLALTSYPRLSSAAVG--VYGTPYPSTDQNPYP 113
           PRP  ++P+ G+T    Q     +AL S    S AA+G   Y T    T+  P P
Sbjct: 257 PRPPKSEPIQGETYDLVQEAAPPVALASQ---SEAALGDEFYDTAEEETESKPSP 308


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 54  AASCCDTPRPIITDPVSGQTVCSCQYDGARLALT--SYPRLSSAAVGVYGTPYPSTDQNP 111
           A  C    R +   P+    V S  Y    L     S   LS   +  Y   Y S + + 
Sbjct: 609 ALKCDSASRAMYITPLKLSAVNSTSYSNVTLIAKWESSRNLSHGILAGYEVIYSSLENSN 668

Query: 112 YPSIGVDSSAFYSPLVPTDRLP 133
              + VD+S+   PL  TD  P
Sbjct: 669 TSLLKVDNSSAVVPLTVTDLKP 690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,486,430
Number of Sequences: 59808
Number of extensions: 230487
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 16,821,457
effective HSP length: 78
effective length of query: 109
effective length of database: 12,156,433
effective search space: 1325051197
effective search space used: 1325051197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)