GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000637-TA|BGIBMGA000637-PA|undefined
         (187 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 59  DTPRPIITDPVSGQTVCSCQYDGARLALTSYPRLSSAAVGVYGTPYPSTDQNPYPSIGVD 118
           ++P   +T P    TV      G+ + + S    +S +     +P PST QNP PS    
Sbjct: 806 NSPGSTVTRP---STVSGSTSSGSTVTVGSTEASTSGSSVASSSPAPSTSQNPNPSTSSG 862

Query: 119 SS 120
           SS
Sbjct: 863 SS 864


>AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical
           protein C08F1.11 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 119 SSAFYSPLVPTDRLPFARIEGKVYRSRYNEFGYSGVACEPESNRSW 164
           ++ ++ P++    +P   +    Y S   EF +SGV  EP S + W
Sbjct: 212 TTRYFCPIINILAIPIVYVAFLAYNSDEFEFEFSGV--EPTSGKFW 255


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,921,756
Number of Sequences: 27539
Number of extensions: 162867
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 12,573,161
effective HSP length: 77
effective length of query: 110
effective length of database: 10,452,658
effective search space: 1149792380
effective search space used: 1149792380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)