Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000636-TA|BGIBMGA000636-PA|undefined
         (71 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    28   0.13 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   0.23 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   0.30 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   2.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    23   4.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    23   4.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   4.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    23   6.5  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   6.5  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    22   8.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    22   8.6  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    22   8.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    22   8.6  
SPAC664.08c |||traub transciption factor family protein |Schizos...    22   8.6  

>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 0.13
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 35  PSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAAS 68
           P R +D ++ SD  +   F+PEEL + L A +A+
Sbjct: 93  PKRKNDNLSLSDLDLDPKFFPEELRKTLGAASAT 126


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 3   HVNSYNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEEL 58
           H+N+  P    SI+ P  P  A+ + S+G  S     D + +  + +++    +EL
Sbjct: 72  HLNTETPSFSVSIENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSNLQMEGNDKEL 127


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 28   CSVGDFSPSRHHDIVTSSDTPVRLP---FW--PEELHEKLSAVAASI 69
            C + DF  S+H D V  +D  + +    FW  PE +H      +A +
Sbjct: 969  CKISDFGISKHSDNVYDNDANLSMQGSIFWMAPEVIHNDHQGYSAKV 1015


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 12  VTSIDGPPSPGPAYANCSVG 31
           +  ID  P+ GP + +CS G
Sbjct: 614 IRCIDKVPNDGPMFVHCSAG 633


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 23  PAYANCSVGDFSPSRHHDIVTSSDTP 48
           P+ ++ SV  F P R   + ++SD P
Sbjct: 239 PSSSSSSVAPFVPRRQFSVSSASDPP 264


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 4   VNSYNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHEKLS 63
           +N  N +G   +    + G  + NC+   ++ S     + + D   ++PF+ E    +L 
Sbjct: 284 LNGRNGLGSIFVFASGNGGHYHDNCNFDGYTNSIFSATIGAVDAEHKIPFYSEVCAAQLV 343

Query: 64  AVAAS 68
           +  +S
Sbjct: 344 SAYSS 348


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 25   YANCSVGDFSPSRHHDIVTSSD 46
            ++   VG  SP  HHDI +  D
Sbjct: 1048 HSTAGVGLISPPPHHDIYSIED 1069


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 12  VTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTP 48
           ++S   PPS  P YA  +      S H     SS  P
Sbjct: 561 LSSAPNPPSVMPTYARKTSSHSERSSHSSYHNSSHVP 597


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 3   HVNSYNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVT 43
           H+N +    +    G P  GP      + DF PS  H +V+
Sbjct: 764 HLNLHKTFCIPHGGGGPGVGPICVKKHLADFLPS--HPVVS 802


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 27  NCSVGDFSPSRHHDIVTSSDTP 48
           N S G   PSR   + + S TP
Sbjct: 129 NSSAGATGPSRRRQVSSGSSTP 150


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 32  DFSPSRHHDIVTSSDTPVRL 51
           DF+   +HD  +SS TP  +
Sbjct: 576 DFTMEYNHDFFSSSKTPTNI 595


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 22  GPAYANCSVGDFSPSRHHDIVTSSDT 47
           GP Y+ C   D  PS       SS T
Sbjct: 97  GPYYSQCIPVDIDPSSSSSSAASSTT 122


>SPAC57A7.04c |pabp||mRNA export shuttling protein
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 9  PIGVTSIDGPPSPGPAYANCSVGDFSPS 36
          P   +S+  P    P  A+  VG+  PS
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPS 90


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 39  HDIVTSSDTPVRLPFWPEELHEKL 62
           HD + +   P+ +  WP+E  E L
Sbjct: 388 HDKLQNFMAPIEVTVWPDEQTEDL 411


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,420
Number of Sequences: 5004
Number of extensions: 14198
Number of successful extensions: 26
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 14
length of query: 71
length of database: 2,362,478
effective HSP length: 51
effective length of query: 20
effective length of database: 2,107,274
effective search space: 42145480
effective search space used: 42145480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)