Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000636-TA|BGIBMGA000636-PA|undefined
         (71 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-4|CAB02281.1|  395|Caenorhabditis elegans Hypothetical pr...    31   0.13 
DQ907010-1|ABI83734.1|  405|Caenorhabditis elegans EAK-6B isofor...    31   0.13 
DQ907009-1|ABI83733.1|  388|Caenorhabditis elegans EAK-6A isofor...    31   0.13 
U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective fasci...    29   0.30 
AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormo...    29   0.30 
Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical pr...    27   1.2  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    27   1.2  
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    27   1.2  
Z82080-2|CAB04951.1|  428|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   2.1  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   2.1  
Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical pr...    26   3.7  
U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical pr...    25   4.9  
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z79756-9|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    25   8.6  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    25   8.6  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    25   8.6  

>Z80216-4|CAB02281.1|  395|Caenorhabditis elegans Hypothetical
           protein F10G8.4 protein.
          Length = 395

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 7   YNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP-FWPEELHEKLSAV 65
           YN + +TS    P     Y N SV +F     H I+T +    ++P FW     +K  A+
Sbjct: 70  YNLVNLTSTQRNPL---GYINASVAEFPEIGRHYIITGAAQDTQIPFFWQMVFEQKSPAI 126


>DQ907010-1|ABI83734.1|  405|Caenorhabditis elegans EAK-6B isoform
           protein.
          Length = 405

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 7   YNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP-FWPEELHEKLSAV 65
           YN + +TS    P     Y N SV +F     H I+T +    ++P FW     +K  A+
Sbjct: 70  YNLVNLTSTQRNPL---GYINASVAEFPEIGRHYIITGAAQDTQIPFFWQMVFEQKSPAI 126


>DQ907009-1|ABI83733.1|  388|Caenorhabditis elegans EAK-6A isoform
           protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 7   YNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP-FWPEELHEKLSAV 65
           YN + +TS    P     Y N SV +F     H I+T +    ++P FW     +K  A+
Sbjct: 70  YNLVNLTSTQRNPL---GYINASVAEFPEIGRHYIITGAAQDTQIPFFWQMVFEQKSPAI 126


>U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective
           fasciculation of axonsprotein 1 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 4   VNSYNPIGVTSIDGPPSPGPAYANCSV-GDFSPSRHHDIV 42
           VNS+  +G    D PP+       C+V GD S  +H+ I+
Sbjct: 78  VNSFPSMGSVKTDSPPTASSPTLCCAVCGDVSSGKHYGIL 117


>AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormone
           receptor FAX-1 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 4   VNSYNPIGVTSIDGPPSPGPAYANCSV-GDFSPSRHHDIV 42
           VNS+  +G    D PP+       C+V GD S  +H+ I+
Sbjct: 78  VNSFPSMGSVKTDSPPTASSPTLCCAVCGDVSSGKHYGIL 117


>Z50176-4|CAA90541.1|  546|Caenorhabditis elegans Hypothetical
           protein C09G1.4 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 16  DGPPSPGPAYANCSVGDF-SPSRHHDIVTSSDTPVRLPFWPEE 57
           D PP     Y + S  D+ +P+    I + S TP RLP  P++
Sbjct: 78  DLPPGAYQNYRSHSSADYLTPNSARKIASYSTTPRRLPLQPQQ 120


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 33  FSPSRHHDIVTSSDTPVRLPFW 54
           FSPS+ H+++ S D   R+  W
Sbjct: 83  FSPSKEHELLASGDCEGRITIW 104


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 33  FSPSRHHDIVTSSDTPVRLPFW 54
           FSPS+ H+++ S D   R+  W
Sbjct: 85  FSPSKEHELLASGDCEGRITIW 106


>Z82080-2|CAB04951.1|  428|Caenorhabditis elegans Hypothetical
          protein W09G3.2 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 15 IDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELH 59
          +  PPSP PA    ++G  +  R+ DI++      R+P+  EEL+
Sbjct: 10 VPSPPSPHPA--GTTIGGPNSKRYSDILSLDYCTFRIPY--EELN 50


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 6    SYNPIGVTS-IDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEE 57
            S +P+     +D P SP P+    S      S HH + T++ T V   F  EE
Sbjct: 2532 SVSPVDAQEQVDVPHSPAPSSHAESEQPVPESPHHIVETTTTTTVTREFQDEE 2584


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 6    SYNPIGVTS-IDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEE 57
            S +P+     +D P SP P+    S      S HH + T++ T V   F  EE
Sbjct: 2532 SVSPVDAQEQVDVPHSPAPSSHAESEQPVPESPHHIVETTTTTTVTREFQDEE 2584


>Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical
           protein ZK637.3 protein.
          Length = 599

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 19  PSPGPAYANCSVGDFSPSRHHDIVTS---SDTPV-RLPFWPEELHEK 61
           PS    +  CSVGDF+     D++ S    DT +     W  E+ ++
Sbjct: 82  PSLNADFVECSVGDFNGDSRLDVLVSIRDKDTEIYNHTLWTSEIEDE 128


>Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical
           protein F52H3.4 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 29  SVGDFSPSRHHDIVTSSDTPV 49
           SV DF+   HH +V  +D P+
Sbjct: 207 SVSDFADQLHHPMVNGADLPI 227


>U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical
           protein K02E10.7 protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 30  VGDFSPSRHHDIVTSSDTPVR-LPFWPEELHEKLSAVAA 67
           + D   S+  + +  S TP+  LPF   ELH +LS V +
Sbjct: 187 ISDIESSQFLNWLPFSQTPLHILPFIAPELHNQLSEVTS 225


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 14  SIDGPPSPGPA-YANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHEKLSA 64
           S DGPP P P  Y       F      D     + P  +  W   LHE + +
Sbjct: 453 SADGPPLPSPVHYVATQAAKFLSMNQEDTEYILEGPSSIQCW-SRLHEVIES 503


>Z79756-9|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
          protein F53C11.5b protein.
          Length = 891

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 18 PPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP 52
          P SP P + +        S HHD  T+  T    P
Sbjct: 9  PSSPAPGHGSSGYFSQQESTHHDERTTPPTAFHFP 43


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 20  SPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEEL 58
           S GPA +  S G F   +H     +S+ P+ +P   E +
Sbjct: 619 SVGPAVSAPSGGHFDRRQHGQSNMASERPIEIPSQSESI 657


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/20 (45%), Positives = 9/20 (45%)

Query: 9   PIGVTSIDGPPSPGPAYANC 28
           P G    DG P P  AY  C
Sbjct: 281 PAGAPGTDGAPGPDAAYCPC 300


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 43  TSSDTPVRLPFWPEELHEKLSAVAASIV 70
           ++ D   RLP W E+ H  +  +A SIV
Sbjct: 318 STGDMSRRLPMWQEDQHWLMLILANSIV 345


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,358
Number of Sequences: 27539
Number of extensions: 81967
Number of successful extensions: 138
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 20
length of query: 71
length of database: 12,573,161
effective HSP length: 51
effective length of query: 20
effective length of database: 11,168,672
effective search space: 223373440
effective search space used: 223373440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)