Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000636-TA|BGIBMGA000636-PA|undefined
(71 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 29 0.50
At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase famil... 29 0.50
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 28 0.66
At1g31240.1 68414.m03823 expressed protein identical to hypothet... 27 1.5
At3g59780.1 68416.m06671 expressed protein 27 2.0
At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH) domain... 26 2.7
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 25 4.7
At2g03505.1 68415.m00310 glycosyl hydrolase family protein 17 si... 25 6.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 25 6.1
At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2) ... 25 8.1
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 25 8.1
At1g35560.1 68414.m04415 TCP family transcription factor, putati... 25 8.1
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 28.7 bits (61), Expect = 0.50
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 4 VNSYNPIGVT----SIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTP 48
+ + NP VT S+D PP P N SP + TSS TP
Sbjct: 371 IGNNNPPAVTETLSSVDFPPEKRPKLQNHDQSYLSPHHQNTATTSSSTP 419
>At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
similar to GI:1617270 (MF7P) and gi:1617628 (MF45P)
from [Brassica napus] ; contains Pfam AMP-binding
enzyme domain PF00501
Length = 660
Score = 28.7 bits (61), Expect = 0.50
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 11 GVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSD 46
GV IDG PS GP Y N P +I T+ D
Sbjct: 11 GVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWD 46
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function,
DUF266
Length = 651
Score = 28.3 bits (60), Expect = 0.66
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 3 HVNSYNPIGVTSIDGPPSPGPAYANCSVGD 32
H S NP+ S+ PPSP P + ++ D
Sbjct: 67 HTLSSNPLTSPSLSPPPSPSPRSSGSNIAD 96
>At1g31240.1 68414.m03823 expressed protein identical to
hypothetical protein GB:AAD21690 GI:4512621 from
(Arabidopsis thaliana)
Length = 277
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 1 MSHVNSYNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHE 60
+ HV + VTS+ P P + CS +R + +SD+ +R PE L
Sbjct: 154 LDHVAVTRSVDVTSVPAWLPPFPDSSLCSDRCSKDNRSDHLWENSDSVIRREILPESLKS 213
Query: 61 K 61
K
Sbjct: 214 K 214
>At3g59780.1 68416.m06671 expressed protein
Length = 610
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 31 GDFSPSRHHDIVTSSDTPVRLPFWPEELHEK 61
GD SP D++ S D V + PE L EK
Sbjct: 306 GDLSPKSTLDLLKSRDKSVLIDVRPEALREK 336
>At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain.
ENTH (Epsin N-terminal homology) domain; similar to
clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 374
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 4 VNSYNPIGVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHEKLS 63
V +YN I+ ++ +C V D + H + S+TP +PF E++ +L+
Sbjct: 27 VQNYNEKAFFDIEVAVVRATSHDDCPVDD--KTMHEILFLVSNTPGSIPFLAEQISRRLA 84
Query: 64 AVAASIV 70
+V
Sbjct: 85 KTRDCLV 91
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 25.4 bits (53), Expect = 4.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 24 AYANCSVGDF-SPSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAASIV 70
+Y + SV SPSRH + +PVR P P E +A+AA+++
Sbjct: 427 SYDSASVMQLQSPSRHSQMNHYPSSPVRQP--PPHGFESSAAMAAAVM 472
>At2g03505.1 68415.m00310 glycosyl hydrolase family protein 17
similar to Glucan endo-1,3-beta-glucosidase precursor
(EC 3.2.1.39) ((1-3)-beta- glucan endohydrolase)
((1-3)-beta-glucanase) (Beta-1,3- endoglucanase)
(Swiss-Prot:P52409) [Triticum aestivum]; similar to beta
1,3-glucanase (GI:924953) [Triticum aestivum]
Length = 168
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 9 PIGVTSIDGPPSPGPAYANCSVGDFSPS 36
P G + GPP+ GPA GDF PS
Sbjct: 122 PSGTQTFPGPPAFGPA------GDFDPS 143
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 18 PPSPGPAYANCSVGDFSPSRHHDIVTSSDTPV 49
PPSP P Y S SPS + SS PV
Sbjct: 537 PPSPPPPYIYSSPPPPSPSPPPPYIYSSPPPV 568
>At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2)
Identical to (SP:P47927) Floral homeotic protein
APETALA2. [Mouse-ear cress] {Arabidopsis thaliana}
Length = 432
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 16 DGPPSPGPAYANCSVGD-FSPSRHHDIVTSSDTP 48
DG S N + FSP H+ I S+ TP
Sbjct: 381 DGRASTNQVLTNAAASSGFSPHHHNQIFNSTSTP 414
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 13 TSIDGPPSPGPAYANCSVGDFSPSRHHDIVT 43
+S PP P P Y+ ++ + SP HH +T
Sbjct: 85 SSTPSPPYPNPNYSYSTMAN-SPPPHHSPLT 114
>At1g35560.1 68414.m04415 TCP family transcription factor,
putative similar to PCF2 (GI:2580440) and PCF1
(GI:2580438) [Oryza sativa]
Length = 341
Score = 24.6 bits (51), Expect = 8.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 SHVNSYNPIGVT-SIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP 52
SH N+ + T S PS GP + S+ +P+ VT++ TP + P
Sbjct: 3 SHNNNQSNNNTTGSAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRP 54
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.132 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,271
Number of Sequences: 28952
Number of extensions: 76276
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 12
length of query: 71
length of database: 12,070,560
effective HSP length: 51
effective length of query: 20
effective length of database: 10,594,008
effective search space: 211880160
effective search space used: 211880160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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