GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000636-TA|BGIBMGA000636-PA|undefined
         (71 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       29   0.006
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   2.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   2.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    19   6.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    19   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    18   8.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        18   8.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 0.006
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 34  SPSRHHDIVTSSDTPVRLPFWPEELHEK 61
           +P    D VTS   PVR P   EE+HEK
Sbjct: 350 TPPNPLDAVTSGLLPVRPPLTREEIHEK 377


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 28 CSV-GDFSPSRHHDI 41
          C V GDFS  +H++I
Sbjct: 38 CKVCGDFSSGKHYNI 52


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 28 CSV-GDFSPSRHHDI 41
          C V GDFS  +H++I
Sbjct: 38 CKVCGDFSSGKHYNI 52


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
          protein.
          Length = 343

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 24 AYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAA 67
          AY++ S    SP       ++S      P+     H   +A AA
Sbjct: 34 AYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
          protein.
          Length = 209

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 24 AYANCSVGDFSPSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAA 67
          AY++ S    SP       ++S      P+     H   +A AA
Sbjct: 34 AYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 26  ANCSVGDFSPSRHHDIVTSSDTP 48
           A   +G   PS    I+T+ + P
Sbjct: 973 AENEIGSSEPSETVTIITAEEVP 995


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 31  GDFSPSRHH 39
           GDF PS+ H
Sbjct: 290 GDFQPSQVH 298


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,466
Number of Sequences: 317
Number of extensions: 850
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 71
length of database: 114,650
effective HSP length: 45
effective length of query: 26
effective length of database: 100,385
effective search space:  2610010
effective search space used:  2610010
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)