Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000636-TA|BGIBMGA000636-PA|undefined
(71 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 31 0.13
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05) 27 1.6
SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05) 27 1.6
SB_2096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 27 2.1
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13) 27 2.8
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 26 4.8
SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.8
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.8
SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 25 6.4
SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.4
SB_45277| Best HMM Match : DUF912 (HMM E-Value=9.2) 25 8.4
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.4
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 25 8.4
SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30) 25 8.4
SB_45501| Best HMM Match : Zona_pellucida (HMM E-Value=3.5e-25) 25 8.4
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 11 GVTSIDGPPSPGPAYANCSVGDFSPSRHHDIVTSSDTPVRLP 52
G D PP+ G + A + +PS D+ SSD PVR P
Sbjct: 250 GSNGSDKPPTDGSSDATSTTAS-TPSTAEDVTESSDPPVRKP 290
>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1433
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 34 SPSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAASIVI 71
S + HH + ++ P+ WP EL KL +A I+I
Sbjct: 1067 SQTYHHYLCIPAEKPIE-ELWPSELGYKLDRLAEVIII 1103
>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1395
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 34 SPSRHHDIVTSSDTPVRLPFWPEELHEKLSAVAASIVI 71
S + HH + ++ P+ WP EL KL +A I+I
Sbjct: 993 SQTYHHYLCIPAEKPIE-ELWPSELGYKLDRLAEVIII 1029
>SB_2096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 18 PPSPGPAYANCSVGDFSPSRHHDIVTSS 45
PPSP P+YA CS P H + T S
Sbjct: 13 PPSPAPSYAQCSHPWLRP-LHQPLATPS 39
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 VGDFSPSRHHDIVTSSDTPVRL-PFWPEELHEKLS 63
VG+ S + H V+S DTP L W H+K S
Sbjct: 215 VGNNSQKQRHQTVSSDDTPGDLISIWSARPHQKTS 249
>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
Length = 1389
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 7 YNPIGVTSIDGPPSPGPAYANC 28
+N + V SIDGPPS ++ +C
Sbjct: 537 HNSVNVDSIDGPPSLDLSHEHC 558
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 5 NSYNPIGVTSIDGPPS-PGP 23
N NP G +DGPP PGP
Sbjct: 1814 NPGNPAGPPGLDGPPGPPGP 1833
>SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 2 SHVNSYNPIGVTSIDGP 18
+H N N +GV S+DGP
Sbjct: 483 NHTNIINMVGVCSVDGP 499
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 18 PPSPGPAYANCSVG 31
PPSPGPA C G
Sbjct: 1582 PPSPGPAVGKCDSG 1595
>SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 157
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 9 PIGVTSIDGPPSPGPAYANCSVGDFSPSR 37
P+ D P P P A + DFSPSR
Sbjct: 125 PMRKAKADRPLGPSPPSALPDLADFSPSR 153
>SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 32 DFSPSRHHDIVTSSDTPVRLPFWPEELH 59
DFSP RHH D P P P +H
Sbjct: 191 DFSPLRHHGYGPDLDRPSTSPL-PSNVH 217
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 11 GVTSIDGPPSP-GPAYANCSVGD 32
G+ +DGPP P GPA GD
Sbjct: 1187 GINGLDGPPGPDGPAGVQGVKGD 1209
>SB_45277| Best HMM Match : DUF912 (HMM E-Value=9.2)
Length = 188
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 1 MSHVNSYNPIGVTSIDGP 18
M HV SY GVT +GP
Sbjct: 169 MGHVTSYEQSGVTDDEGP 186
>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 IGVTSIDGPPSPGPAYANCSVGDF 33
+G+T+I+ PP +AN S+ F
Sbjct: 573 MGLTTIENPPRKSGMFANVSIQQF 596
>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
Length = 184
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 18 PPSPGPAYANCSVGDFSPSRHHDIVTS 44
PP YAN S GD P+ H ++S
Sbjct: 122 PPIREDGYANTSRGDRGPASPHSFLSS 148
>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
Length = 1142
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 27 NCSVGDFSPSRHHDIVTSSDTPVRL-PFWPEELHEKLSAVAASIV 70
N ++ D S S + V SD P L WP LHE+ +A S++
Sbjct: 522 NIAMNDLSLSNQSEFV--SDCPGFLVERWPYGLHERSMFIATSVL 564
>SB_45501| Best HMM Match : Zona_pellucida (HMM E-Value=3.5e-25)
Length = 341
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 1 MSHVNSYNPIGVTSIDGP 18
M HV SY GVT +GP
Sbjct: 322 MGHVTSYEQSGVTDDEGP 339
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,553
Number of Sequences: 59808
Number of extensions: 112174
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 18
length of query: 71
length of database: 16,821,457
effective HSP length: 50
effective length of query: 21
effective length of database: 13,831,057
effective search space: 290452197
effective search space used: 290452197
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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