GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000635-TA|BGIBMGA000635-PA|IPR001766|Fork head
transcription factor
         (178 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...   129   1e-32
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...   128   3e-32
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   3.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score =  129 bits (311), Expect = 1e-32
 Identities = 59/111 (53%), Positives = 74/111 (66%)

Query: 2   TPSSPGNSEIKAQTTSSNSQALTKPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPF 61
           TP     S+   +  S   ++  KPPYSY ALI MAI+NS  KR TL+ IY YI + FP+
Sbjct: 60  TPPPLDCSKNSPEKESEEKKSKEKPPYSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPY 119

Query: 62  FEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPQCGEMFENG 112
           + +NK+GWQNSIRHNLSLN+CF+KVPR      KGNYW LDP   ++F  G
Sbjct: 120 YRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGG 170


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score =  128 bits (309), Expect = 3e-32
 Identities = 57/101 (56%), Positives = 71/101 (70%)

Query: 12  KAQTTSSNSQALTKPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPFFEKNKKGWQN 71
           +A  T   S    KPPYSY++LITMAIQNS  K  TLSEIY +I   FPF+ +N++ WQN
Sbjct: 127 RADKTYRRSYTHAKPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQN 186

Query: 72  SIRHNLSLNECFIKVPREGGGERKGNYWTLDPQCGEMFENG 112
           SIRH+LS N+CF+KVPR      KG++W+L P  G MFENG
Sbjct: 187 SIRHSLSFNDCFVKVPRTPDKPGKGSFWSLHPDSGNMFENG 227


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 1   MTP-SSPGNSEIKAQTTSSNSQALTK 25
           +TP +SP  + +  Q+TSSN+ A  K
Sbjct: 149 VTPKTSPNEASMSPQSTSSNNSASPK 174


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 1   MTP-SSPGNSEIKAQTTSSNSQALTK 25
           +TP +SP  + +  Q+TSSN+ A  K
Sbjct: 169 VTPKTSPNEASMSPQSTSSNNSASPK 194


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 131 KALFGDGYHVSHVAQHVPPHMQPLPLGP 158
           +AL GDG    HV  ++    QP P+ P
Sbjct: 168 EALQGDGRMRQHVMHNLSSVPQPQPVLP 195


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 131 KALFGDGYHVSHVAQHVPPHMQPLPLGP 158
           +AL GDG    HV  ++    QP P+ P
Sbjct: 168 EALQGDGRMRQHVMHNLSSVPQPQPVLP 195


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 131 KALFGDGYHVSHVAQHVPPHMQPLPLGP 158
           +AL GDG    HV  ++    QP P+ P
Sbjct: 168 EALQGDGRMRQHVMHNLSSVPQPQPVLP 195


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,253
Number of Sequences: 317
Number of extensions: 1579
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 114,650
effective HSP length: 53
effective length of query: 125
effective length of database: 97,849
effective search space: 12231125
effective search space used: 12231125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)