GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000635-TA|BGIBMGA000635-PA|IPR001766|Fork head
transcription factor
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    97   1e-21
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    95   4e-21
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    95   7e-21
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    81   7e-17
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.5  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 43/85 (50%), Positives = 57/85 (67%)

Query: 25  KPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPFFEKNKKGWQNSIRHNLSLNECFI 84
           KPPYSY  +I  AI +S     TLS IY++I+  +P++   K GWQNSIRHNLSLN+ F 
Sbjct: 223 KPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAFR 282

Query: 85  KVPREGGGERKGNYWTLDPQCGEMF 109
           KVPR+ G + KG  W++ P+  E F
Sbjct: 283 KVPRKSGEQGKGMKWSIVPEFREEF 307


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 95.5 bits (227), Expect = 4e-21
 Identities = 47/107 (43%), Positives = 59/107 (55%)

Query: 25  KPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPFFEKNKKGWQNSIRHNLSLNECFI 84
           KPP SY  LI +AI  S  K+ TLS IY +I   F ++  +  GWQNSIRHNLSLN+ FI
Sbjct: 81  KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140

Query: 85  KVPREGGGERKGNYWTLDPQCGEMFENGNFXXXXXXXXXXXANPYSK 131
           KV +  G   KG+YWT+DP   + F +                P SK
Sbjct: 141 KVEKPKGKTLKGHYWTIDPDHMQNFVSVRLHRSHSTDSNSKKRPSSK 187


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 43/85 (50%), Positives = 56/85 (65%)

Query: 25  KPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPFFEKNKKGWQNSIRHNLSLNECFI 84
           KPPYSY  LI M+I  S  +R TLS IY +I+  F F+ K+  GWQNSIRHNLSLN+ F+
Sbjct: 128 KPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAFM 187

Query: 85  KVPREGGGERKGNYWTLDPQCGEMF 109
           K+ R      KG++W++ P   E F
Sbjct: 188 KIERPRNLPGKGHFWSIRPGHEEQF 212


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 81.4 bits (192), Expect = 7e-17
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 4   SSPGNSEIKAQTTSS--NSQALTKPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPF 61
           +SP ++ +      S     A  KP  SY  LI   +  +  K+ TL +I  +I   + +
Sbjct: 268 TSPSDTVLHPDLNGSPDTGDATQKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSY 327

Query: 62  FEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPQCGEMFENGNF 114
           +      W NSIRHNLSLN+ FI++PR      KG++W LDP   + FE GNF
Sbjct: 328 YRHQPPAWHNSIRHNLSLNKAFIRIPRRQNEPGKGSFWMLDPSYIDQFE-GNF 379


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 2    TPSSPGNSEIKAQTTSSNSQALTKPPYS 29
            +PSSPG S   A   SS S + T P YS
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYS 1586


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 2   TPSSPGNSEIKAQTTSSNSQALTKPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPF 61
           T S+    E+    +S NS    K      +   +  + S      + ++  ++     F
Sbjct: 573 TSSTDNTKELSMSASSENSDCPHKEGECVGSFCNINAKGSSLNN--IPKLPRFVPVPSEF 630

Query: 62  FEKNKKGWQNSIRHNL 77
           F+KN++ W    +H L
Sbjct: 631 FKKNQRSWVTLKKHRL 646


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,152
Number of Sequences: 5004
Number of extensions: 27795
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 6
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)