GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000635-TA|BGIBMGA000635-PA|IPR001766|Fork head
transcription factor
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   3.1  
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    27   5.4  
At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein sim...    27   7.1  

>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 4   SSPGNSEIKAQTTSSNSQALTKPPYSYVALITMAIQNSQTKRATLSEIYAYITKEFPFFE 63
           S  G++  K  +T   SQ    P  + VA +T  I    +  A  S      +   PF +
Sbjct: 810 SGSGSASSKPDSTIKQSQTAKPPTVAEVAPVTSNIPLEPSTEAASS------SASKPFSK 863

Query: 64  KNKKGWQNSIRHN 76
           KNK+G + S+  N
Sbjct: 864 KNKRGKKRSMSGN 876


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 48  LSEIYAYITKEFPFFEKNKKGWQNSIRHNLSLNEC 82
           L+E  +Y+     F E+ ++GW + I +  S+NEC
Sbjct: 454 LAEANSYMKVRIKFIERRERGWYDVILN--SVNEC 486


>At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein
           similar to SP|P53370 Nucleoside diphosphate-linked
           moiety X motif 6 {Homo sapiens}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 215

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 36  MAIQNSQTKRATLSEIYAYITKEFPFFEKNKKGWQNSIRHNLSLNECF 83
           +   N  TK +T  E Y Y + +  +F K K    ++      L +CF
Sbjct: 166 LGFSNVLTKNSTGKESYLYCSTDHAYFLKGKPDHSSTSLFTTLLRKCF 213


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,954
Number of Sequences: 28952
Number of extensions: 144247
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)