Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000634-TA|BGIBMGA000634-PA|undefined
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   0.60 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   0.80 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   1.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   1.8  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   1.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   4.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    24   5.6  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    23   7.4  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    23   7.4  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    23   9.8  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    23   9.8  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 19  AFKAAGFPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNE 60
           AFK   FP+ K      L   F+ V SR T GG +    N +
Sbjct: 201 AFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQ 242


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 39  DFRKVVSRGTDGGG-----LDGVCNNEVPRLTPGLHPESFFDMNELPTNAYSLDTRRMQL 93
           D   VV  G DGGG     L  +C   V  +  GL  E+   +    T+AY+ D  R++ 
Sbjct: 706 DEHGVVEEGIDGGGLTKEFLTSICKT-VFDINYGLFSETKAHLLYPNTHAYAQDVERLRC 764

Query: 94  Y 94
           Y
Sbjct: 765 Y 765


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 36  LRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPES 72
           L N ++++     DG   +G+ N E P  +   HPES
Sbjct: 390 LSNGWKELFVNANDGSN-EGIYNTEYPFFSVQFHPES 425


>SPBP8B7.27 |mug30||ubiquitin-protein ligase
          E3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 63 RLTPGLHPESFFDMNELPTNAYSLDTRRMQ 92
          R  P LH  SF   +EL  N  S  +RR++
Sbjct: 16 RTLPALHGSSFSSRSELDNNTNSKISRRLR 45


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 23  AGFPEFKTGI-EELLRNDFRKVVSRGTDGGGLDG--VCNNEVPRLTPGLHPE 71
           A F  + TG+   LL  D    V  GT GGGL    VC      L   L PE
Sbjct: 257 ASFAIYHTGVLRALLNQDLIPNVITGTSGGGLLAALVCTRTNEELKQLLVPE 308


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 32  IEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTP 66
           +EEL  +D  K+V R T    LD + NN    L+P
Sbjct: 925 LEELKSSDLYKIVFRDTLQAILD-IMNNNAETLSP 958


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 15  AYTVA-FKAAG-FPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCN 58
           AYTV  +KAA    +  +GI +LLR  F     R  D   L G+ N
Sbjct: 134 AYTVDDYKAAANCLQCASGIAKLLRESFIHAPGRDLDSNFLLGIYN 179


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 35  LLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPESFFDMNELPTNAYSL 86
           L + D R V+    + G L+     EVPR +     ++FF     P  AYSL
Sbjct: 464 LRQRDLRTVLQAMAEIGALE---LQEVPRSSDRAPSKTFFLWFHRPDRAYSL 512


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 8   VNDAIE--DAYTVAFKAAGFPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLT 65
           V + IE  D+ T A K   F   +  +E +      K+   G   GG+ G      P   
Sbjct: 572 VKETIEWLDSNTTAAKDE-FEAKQKELESVANPIMAKIYQAGGAPGGMPGAAPGAAPGAA 630

Query: 66  PGLHP 70
           PG  P
Sbjct: 631 PGAAP 635


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 18  VAFKAAGFPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPE 71
           V F+    P    G  E++    ++++     GGG  G   N    +TPG++P+
Sbjct: 289 VTFQGNLDPNILYGTREIIEARTKEMIQ--DFGGGKQGYIINLGHGITPGVNPD 340


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 46  RGTDGGGLDGVCNNEVPRLTPGLHPESFFD 75
           R TD      V  N+  RL    H E FFD
Sbjct: 267 RKTDAQRASRVDVNKASRLWKAFHDEGFFD 296


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,022
Number of Sequences: 5004
Number of extensions: 20815
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 11
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)