Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000634-TA|BGIBMGA000634-PA|undefined
         (104 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59272| Best HMM Match : zf-RNPHF (HMM E-Value=2)                    29   0.71 
SB_53571| Best HMM Match : MORN (HMM E-Value=1.12104e-44)              28   1.6  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                 26   5.0  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 25   8.8  

>SB_59272| Best HMM Match : zf-RNPHF (HMM E-Value=2)
          Length = 376

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 9   NDAIEDAYTVAF-KAAGFPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPG 67
           N+ + + +  A+ K+AG    K G+  LL  D+R +VS+      ++G   N +  L+ G
Sbjct: 300 NEVLMEKFRKAYHKSAGDSPLKVGLLTLLCADYRDIVSKFIAHYDVEGNTTNNLRELSTG 359


>SB_53571| Best HMM Match : MORN (HMM E-Value=1.12104e-44)
          Length = 221

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 28  FKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPE 71
           FKTG  +  +   ++VVSR TDG G      N    ++ GLH E
Sbjct: 178 FKTGCAQTGQYVSKRVVSRDTDGEGYS--VENRPAWISTGLHYE 219


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 28  FKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTP 66
           F   I +LL+ + RK  SRG DGG          P L P
Sbjct: 276 FTVEIFDLLQGEDRKTRSRGRDGGPAQHSVKPRYPSLPP 314


>SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 1006

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 33  EELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPESF 73
           E  L  D++ +     DG   +G+ +   P +T   HPE F
Sbjct: 308 EATLPRDWKPIFVNANDGSN-EGIMHTSKPIVTAQFHPEHF 347


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 25   FPEFKTGIEELLRNDFRKVVSR 46
            F EF TG+EEL + D+    SR
Sbjct: 1143 FEEFNTGLEELAKEDWISFRSR 1164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,636,967
Number of Sequences: 59808
Number of extensions: 145884
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)