GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000634-TA|BGIBMGA000634-PA|undefined
         (104 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0166 + 27145250-27145778,27146062-27146516                       28   1.6  
02_02_0222 - 8017291-8018454                                           27   2.8  
07_01_0427 + 3255857-3255922,3257061-3257180,3257382-3257403,325...    27   3.7  
05_07_0133 - 27908427-27908555,27908705-27908827,27908915-279090...    27   3.7  
06_01_0221 + 1690978-1692171,1692265-1692276                           25   8.5  
04_04_1301 - 32479307-32479837                                         25   8.5  
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162           25   8.5  
01_04_0132 + 16469922-16470145,16472720-16472793,16473613-164737...    25   8.5  
01_01_0415 - 3123807-3123940,3124002-3124200                           25   8.5  

>01_06_0166 + 27145250-27145778,27146062-27146516
          Length = 327

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 39 DFRKVVSRGTDGGGLDGVCN 58
          D+R+ V RG +GGG DGVC+
Sbjct: 50 DWRRGVGRGGEGGG-DGVCD 68


>02_02_0222 - 8017291-8018454
          Length = 387

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 27  EFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPG 67
           E   G ++    ++  V+  G   GG DG   N  P + PG
Sbjct: 90  EIPDGFQDCADPNYAYVLEEGRRYGGADGFLVNSFPEMEPG 130


>07_01_0427 +
           3255857-3255922,3257061-3257180,3257382-3257403,
           3257978-3258026,3259119-3259190,3259993-3260068,
           3260823-3260894
          Length = 158

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 8   VNDAIEDAYTVAFKAAGFPEFKTG-IEELLR 37
           +N  I D YT  FK    P+ + G +EE+ R
Sbjct: 85  INSTIRDEYTYIFKGRRKPQLRMGLVEEIQR 115


>05_07_0133 -
          27908427-27908555,27908705-27908827,27908915-27909022,
          27909109-27909198,27909304-27909363,27909454-27909516,
          27909604-27909678,27910337-27910402,27910607-27910786
          Length = 297

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 10 DAIEDAYTVAFKAAGFPEFKTGIEELLRNDFRKVVSRGTDGGG--LDGVCNNEVPRL 64
          DA +DA   AF+     +  +G++   R+    VVS    GG   +D  C+ ++ +L
Sbjct: 43 DATKDAVLKAFREKRALKIISGLQNFDRSSVASVVSAADKGGATHVDIACDQDLVKL 99


>06_01_0221 + 1690978-1692171,1692265-1692276
          Length = 401

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 20  FKAAGFPEFKTGIEELLRNDFRKVVSRGTDGGGLDGVCNNEVP 62
           FK  G P +  G++        K  + GT GGG  G+   E P
Sbjct: 335 FKPDGTPAYDVGVKAPTIGGSWKGRANGTSGGGAGGLVVAEGP 377


>04_04_1301 - 32479307-32479837
          Length = 176

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 46  RGTDGGGLDGVCNNEVPRLTPGLHPESFFDMNELPTNAYSLDTRRM 91
           R   GGG  G   ++  RL   L PE   DM ELPT+  ++ + R+
Sbjct: 115 RSVAGGG--GDAPDDDLRLLEQLAPE--LDMGELPTSVMAVQSTRL 156


>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
          Length = 692

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 32  IEELLRNDFRKVVSRGTDGGGLDGVCNNEVPRLTPGLHPESFFDMNELPTNAYSLDTRRM 91
           IE+LLR    +V+  G  G               P +  + F DMN +    +S   RR+
Sbjct: 379 IEDLLRAS-AEVLGSGNFGSSYKATLQER-----PAVVVKRFKDMNGVGREDFSEHMRRL 432

Query: 92  QLYSHQHIHPAIA 104
              SH ++ P +A
Sbjct: 433 GRLSHPNLLPVVA 445


>01_04_0132 +
           16469922-16470145,16472720-16472793,16473613-16473755,
           16474076-16474187,16475235-16475350,16475448-16475594
          Length = 271

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 78  ELPTNAYSLDTRRM--QLYSHQHIHP 101
           E     +++D RR    +YS QH+HP
Sbjct: 143 ERKIEVFNMDARRFISSIYSSQHVHP 168


>01_01_0415 - 3123807-3123940,3124002-3124200
          Length = 110

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 26 PEFKTGIEELLRNDFRKVVSRGTDGGGLD 54
          PE +  ++   R+D + V+  GT G  LD
Sbjct: 14 PEIRAELDRRARDDGKTVIKSGTGGKSLD 42


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,985
Number of Sequences: 37544
Number of extensions: 140679
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 9
length of query: 104
length of database: 14,793,348
effective HSP length: 72
effective length of query: 32
effective length of database: 12,090,180
effective search space: 386885760
effective search space used: 386885760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)