Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000633-TA|BGIBMGA000633-PA|undefined
         (113 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine rece...    30   0.44 
Z77133-3|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    29   0.77 
U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AL110485-29|CAD36500.1|  145|Caenorhabditis elegans Hypothetical...    27   3.1  
AL110485-28|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    27   3.1  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    27   4.1  
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    26   5.5  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        26   7.2  
U00034-3|AAL00850.1|  211|Caenorhabditis elegans Pim (mammalian ...    26   7.2  
U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian ...    26   7.2  
U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian ...    26   7.2  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    26   7.2  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein20 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 20  IWIFT-PVKMHTEHWTWTCKIVLPHKLRYLENMLNSEVVAKATKIRQRI 67
           +WIF+ P   H  H TW C  +    L     +LN     K+ K+ ++I
Sbjct: 152 LWIFSYPETEHCNHLTWYCDFIFNIVLVNFTLILNLIAAFKSRKLHRKI 200


>Z77133-3|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 55  EVVAKATKIRQRIEGNPNMVDTEKNWPMLLA---KYQSKDSLLNEMPFNIPGNKFNKHNR 111
           +V+ K TKI + +  N   + +  +    +    KYQS +S    MP  IPG K + + R
Sbjct: 452 KVLRKTTKILEIMTENAKQIQSHYDTRATILDIMKYQSANSFSETMPREIPGEKGSSYIR 511


>U55854-1|AAA98010.2|  418|Caenorhabditis elegans Hypothetical
           protein C04G6.4 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 5   LRARTPTGNVEEATSIWIFTPVKMHTE-HWTWTCKIVLPHKLRYLENMLN-SEVVAKATK 62
           + A   T   +E  ++ +  P  M     +  TCKIVL H+ +Y + +    E+ +   +
Sbjct: 291 VEAARKTNKAKEDAAVVVIQPFLMEISGRYYSTCKIVLHHESKYFDAISQLLEIPSTLVE 350

Query: 63  IRQRIEGNPNMVDTE 77
           + QR   +  + D E
Sbjct: 351 VIQRAAKSEGLPDDE 365


>Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical
           protein ZK809.3 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 10  PTGNVEEATSIWIFTP------VKMHTEHWTWTCKIVLPHKLRYLENMLNSEVVAKATKI 63
           PT  V   T+I +  P      V + T ++ W  ++     LR LE+M   EV+A A  I
Sbjct: 110 PTFGVYYGTAIRVTAPKLLMAFVVVQTAYYYWKYEVKDWTHLRGLESMPQKEVIASAPAI 169

Query: 64  RQRIEG 69
            ++  G
Sbjct: 170 EEKFPG 175


>AL110485-29|CAD36500.1|  145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 12  GNVEEATSIWIFTPVKMHTEHW 33
           GNV ++++ + F+P  MH  HW
Sbjct: 79  GNVSQSSNCFEFSPTFMHRFHW 100


>AL110485-28|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 12  GNVEEATSIWIFTPVKMHTEHW 33
           GNV ++++ + F+P  MH  HW
Sbjct: 449 GNVSQSSNCFEFSPTFMHRFHW 470


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 43   HKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLL 94
            H    L++    E +A   + R+ +E N N    +KNW  L  + +S D L+
Sbjct: 2870 HSPHVLDDDYEKEELANLEQRRRGLEINANCERLKKNWAELGIEVESWDKLV 2921


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 43   HKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLL 94
            H    L++    E +A   + R+ +E N N    +KNW  L  + +S D L+
Sbjct: 2870 HSPHVLDDDYEKEELANLEQRRRGLEINANCERLKKNWAELGIEVESWDKLV 2921


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 43   HKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLL 94
            H    L++    E +A   + R+ +E N N    +KNW  L  + +S D L+
Sbjct: 2870 HSPHVLDDDYEKEELANLEQRRRGLEINANCERLKKNWAELGIEVESWDKLV 2921


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 70  NPNMVDTEKNWPMLLAKYQS 89
           NPN+ D  KN  +LL  YQ+
Sbjct: 257 NPNLSDVSKNGKILLTSYQN 276


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 42  PHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKD 91
           P+K+   ++ML     ++A K    IEG+   +D E  +     KY+S +
Sbjct: 327 PYKMPETKSMLIDPEASEAQKKVFTIEGSVQKIDEEVRYTSAPRKYESNN 376


>U00034-3|AAL00850.1|  211|Caenorhabditis elegans Pim (mammalian
          oncogene) relatedkinase protein 1, isoform b protein.
          Length = 211

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 29 HTEHWTWTCKIVLPHKLRYLE 49
          H   WT TC+ ++P ++ +LE
Sbjct: 70 HVRSWTMTCRQLIPSEVCHLE 90


>U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian
          oncogene) relatedkinase protein 1, isoform c protein.
          Length = 378

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 29 HTEHWTWTCKIVLPHKLRYLE 49
          H   WT TC+ ++P ++ +LE
Sbjct: 70 HVRSWTMTCRQLIPSEVCHLE 90


>U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian
          oncogene) relatedkinase protein 1, isoform a protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 29 HTEHWTWTCKIVLPHKLRYLE 49
          H   WT TC+ ++P ++ +LE
Sbjct: 70 HVRSWTMTCRQLIPSEVCHLE 90


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 42  PHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKD 91
           P+K+   ++ML     ++A K    IEG+   +D E  +     KY+S +
Sbjct: 327 PYKMPETKSMLIDPEASEAQKKVFTIEGSVQKIDEEVRYTSAPRKYESNN 376


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 42  PHKLRYLENM---LNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 98
           P KL+ L +M     S+ +     + + ++ +P  V T +N  ++L   +   S+LN   
Sbjct: 36  PVKLQELISMDTDAASKAITDLGTLSETLQSSPAEVTTLENRLVILEDIRKTTSILNMFQ 95

Query: 99  FNIPGNK 105
             +PG K
Sbjct: 96  EELPGRK 102


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,461
Number of Sequences: 27539
Number of extensions: 109635
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 12,573,161
effective HSP length: 72
effective length of query: 41
effective length of database: 10,590,353
effective search space: 434204473
effective search space used: 434204473
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)