GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000633-TA|BGIBMGA000633-PA|undefined
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   1.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   3.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   3.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   5.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   5.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   5.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   5.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    19   9.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)

Query: 31  EHWTWTCKIVLPHKLRYLENMLNSEVVAKATKIRQRI 67
           E  TW      PH+L           VA  T IRQ I
Sbjct: 594 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 630


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)

Query: 31  EHWTWTCKIVLPHKLRYLENMLNSEVVAKATKIRQRI 67
           E  TW      PH+L           VA  T IRQ I
Sbjct: 486 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 522


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 87  YQSKDSLLNEMPFNIPGNKFNKHN 110
           Y    +L+NE    +  NK +K N
Sbjct: 97  YPENKTLINETSLQLDENKLDKKN 120


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 87  YQSKDSLLNEMPFNIPGNKFNKHN 110
           Y    +L+NE    +  NK +K N
Sbjct: 97  YPENKTLINETSLQLDENKLDKKN 120


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 78  KNWPMLLAKYQSKDSLLNEMPFNIPGNKFNKHNRYL 113
           K W  ++  Y      L E+P ++        N YL
Sbjct: 696 KRWSQVMYMYYLLGHRLMELPISVDRKAVIAENTYL 731


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 78  KNWPMLLAKYQSKDSLLNEMPFNIPGNKFNKHNRYL 113
           K W  ++  Y      L E+P ++        N YL
Sbjct: 696 KRWSQVMYMYYLLGHRLMELPISVDRKAVIAENTYL 731


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 78  KNWPMLLAKYQSKDSLLNEMPFNIPGNKFNKHNRYL 113
           K W  ++  Y      L E+P ++        N YL
Sbjct: 696 KRWSQVMYMYYLLGHRLMELPISVDRKAVIAENTYL 731


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 78  KNWPMLLAKYQSKDSLLNEMPFNIPGNKFNKHNRYL 113
           K W  ++  Y      L E+P ++        N YL
Sbjct: 696 KRWSQVMYMYYLLGHRLMELPISVDRKAVIAENTYL 731


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 78  KNWPMLLAKYQSKDSLLN 95
           K+WP L+ K+   +  L+
Sbjct: 283 KSWPQLIEKWSRVEMALD 300


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,402
Number of Sequences: 317
Number of extensions: 1064
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)