Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000633-TA|BGIBMGA000633-PA|undefined
(113 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 3.8
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 3.8
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 3.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 3.8
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 24 5.1
SPAC1805.07c |dad2|hos2|DASH complex subunit Dad2|Schizosaccharo... 24 5.1
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 24 5.1
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 24 6.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 6.7
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 23 8.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 8.9
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 46 RYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAK 86
+Y+E+ L SE+ A K+ N N+ + N + L K
Sbjct: 908 KYIEDTLRSEIQEAAEKVSNLEFSNFNLKEENSNMQLQLMK 948
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 48 LENM-LNSEVVAKATKIRQRIEGNPNMVDTEKN 79
+EN+ L + + KA ++ + E N NM+ TE+N
Sbjct: 9 IENVYLLGKKIDKAKRMANKGESNTNMLSTEEN 41
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 44 KLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKN 79
+LR L N ++ + AK+ +R + + DTEKN
Sbjct: 477 RLRSLNNTKSNPLPAKSIDSLERALSSKKITDTEKN 512
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 61 TKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMP 98
+ + + +E +MV E+N L++KY S S NE P
Sbjct: 525 SNMNEAVELTRSMV--EENTIFLISKYASSPSFFNEYP 560
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 24.2 bits (50), Expect = 5.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 68 EGNPNMVDTEKNWPMLLA----KYQSKD--SLLNEMPFNIPGNKFNK 108
E P V + P LLA KYQ + + L +PF +PG +FN+
Sbjct: 240 EITPEWVRDVNDKPGLLALAMEKYQDDEGNTHLRGVPFVVPGGRFNE 286
>SPAC1805.07c |dad2|hos2|DASH complex subunit
Dad2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 44 KLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQ 88
KLR N + ++ A K+ +G+ + NWP + Q
Sbjct: 18 KLRDSSNDMVQQIETLAAKLETLTDGSEAVATVLNNWPSIFESIQ 62
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 5.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 20 IWIFTPVKMHTEHWT-WTCKIVLPHKL 45
++I T VK H EHW W K LP KL
Sbjct: 715 LFINTQVKHH-EHWKLWARKNWLPKKL 740
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.8 bits (49), Expect = 6.7
Identities = 16/80 (20%), Positives = 37/80 (46%)
Query: 28 MHTEHWTWTCKIVLPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKY 87
M + W K++L +L ++ + +S + + + + ++ NP D+ +L +
Sbjct: 157 MLKQQWEDYQKLLLLQRLEQMKVIKDSGIGSFSPSVDVQLGFNPENNDSITPGTILPSTV 216
Query: 88 QSKDSLLNEMPFNIPGNKFN 107
K L+ +PFN N ++
Sbjct: 217 TVKTPWLSVLPFNCKKNHYS 236
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 47 YLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSK 90
Y++ ++NSE V + QRI+ + ++++ N+ +L+ K
Sbjct: 1008 YVDTVVNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQK 1051
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 23.4 bits (48), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 80 WP-MLLAKYQSKDSLLNEMPFNI 101
WP +LL + ++KDSL FN+
Sbjct: 66 WPALLLRRKETKDSLNTNSSFNV 88
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 8.9
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 64 RQRIEG-NPNMVDTEKNWPMLLAKYQSKDSLLNEMPFNIPGN 104
RQ+ E NP ++ + +P++ ++++ D +PGN
Sbjct: 11 RQKKESLNPTTIEIPEKFPLVNVQFRASDDSNELASLLVPGN 52
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.131 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,731
Number of Sequences: 5004
Number of extensions: 21278
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 11
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)
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