Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000633-TA|BGIBMGA000633-PA|undefined
(113 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0459 + 10513611-10514015 29 0.65
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523... 28 2.0
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 27 2.6
09_02_0527 + 10234622-10235773 27 2.6
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 27 2.6
01_07_0102 - 41093042-41093231,41093385-41093473,41093730-410939... 27 2.6
10_02_0064 + 4863861-4864145,4864441-4864464,4864665-4864685 27 3.5
04_03_0340 - 14634664-14634770,14634968-14635076,14635150-146352... 27 3.5
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 26 8.0
02_04_0196 + 20835495-20837255 26 8.0
>02_02_0459 + 10513611-10514015
Length = 134
Score = 29.5 bits (63), Expect = 0.65
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 27 KMHTEHWTWTCKIVLPHKLRYLENMLNSEVVAKA 60
+MHT+ WT TC +++ KL + E L EV++K+
Sbjct: 60 EMHTDRWTSTCDVLVCIKLTHPEINL-EEVLSKS 92
>04_03_0387 -
15251816-15251905,15251999-15252069,15252098-15252323,
15252344-15252496,15252570-15252656,15252745-15252948,
15253038-15253159,15253354-15253507,15254329-15254434,
15254507-15254617,15256468-15256622
Length = 492
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 41 LPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPMLLAKYQSKDS 92
L K R + L + + + ++ PN VD E WP L++ + SKDS
Sbjct: 233 LDGKWRQYKGKLKGKYYKPNLPMERVLQTVPNTVD-ESRWPTLVSYWYSKDS 283
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 22 IFTPVKMHTEHWTWTCKIVLPHKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWP 81
IF P+ M HW + +++ L++M + A QR++ + N++ +++ P
Sbjct: 612 IFIPINMKDNHWYLAVVNIEKKQIQVLDSMCMTFNRADLANTLQRLQYHLNIIGRQQDLP 671
>09_02_0527 + 10234622-10235773
Length = 383
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 83 LLAKYQSKDSLLNEMPFNIPGNKFNKH 109
L A KDS L ++ F++ G +FN H
Sbjct: 174 LAAMSNKKDSTLTDVCFDVDGERFNAH 200
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 67 IEGNPNMVDTEKNWPMLLAKYQSKDSLLNEMPFNIP 102
+EG M ++N + + KY D L +MP+N+P
Sbjct: 125 VEGTFLMYLGDENGLLSVLKYDVDDGKLQKMPYNVP 160
>01_07_0102 -
41093042-41093231,41093385-41093473,41093730-41093924,
41095173-41095334,41095412-41095484,41095691-41095758,
41095847-41095894,41096012-41096101,41096204-41096286,
41097000-41097066
Length = 354
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 26 VKMHTEHWTWTCKIVLPH-KLRYLENMLNSEVVAK 59
V MH E W+ +C+IV+ + KLRY ++ + V++K
Sbjct: 308 VSMHAEAWS-SCRIVMDYSKLRYRMDINGNIVLSK 341
>10_02_0064 + 4863861-4864145,4864441-4864464,4864665-4864685
Length = 109
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 100 NIPGNKFNKHNRY 112
N PGN+FN HNR+
Sbjct: 8 NCPGNRFNYHNRH 20
>04_03_0340 -
14634664-14634770,14634968-14635076,14635150-14635236,
14635325-14635392,14635929-14636076
Length = 172
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 71 PNMVDTEKNWPMLLAKYQSKDS 92
PN VD E WP L++ + SKDS
Sbjct: 51 PNTVD-ESQWPTLVSYWYSKDS 71
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 43 HKLRYLENMLNSEVVAKATKIRQRIEGNPNMVDTEKNWPML----LAKYQSKD 91
H+L+ E L + ++ +TK + I G P E+ W +L +K+ SKD
Sbjct: 735 HRLKNCEASLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPSKFNSKD 787
>02_04_0196 + 20835495-20837255
Length = 586
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 12 GNVEEATSIWIFTPVKMHTEHW 33
GNVEEA ++ + P++ H W
Sbjct: 364 GNVEEAEALLLDMPMEPHASQW 385
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,981
Number of Sequences: 37544
Number of extensions: 114396
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 14,793,348
effective HSP length: 73
effective length of query: 40
effective length of database: 12,052,636
effective search space: 482105440
effective search space used: 482105440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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