Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000632-TA|BGIBMGA000632-PA|IPR001680|WD-40 repeat,
IPR008042|Retrotransposon, Pao, IPR011046|WD40-like
         (451 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   2.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   4.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   7.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 11  STPVPGPTAVGIESSDSRPTFK--PVTVLEDLQAVRCAEFHPNGKLYAVGSNTKTL 64
           ++P   P +V   +    P+    P TV    ++ +   + P G +   GSNT +L
Sbjct: 209 ASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSL 264


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 16  GPTAVGIESSDSRPTFK 32
           GP +VG+ S  S P FK
Sbjct: 202 GPNSVGVSSEVSLPQFK 218


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 108 KTEKDVLTFDLNLTRIPPPLVEGKTPTKREA 138
           +TE      DL++T  PPPL   K   ++E+
Sbjct: 45  ETELSDSDCDLDVTGTPPPLDCSKNSPEKES 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,416
Number of Sequences: 317
Number of extensions: 4914
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 451
length of database: 114,650
effective HSP length: 59
effective length of query: 392
effective length of database: 95,947
effective search space: 37611224
effective search space used: 37611224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)