Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000632-TA|BGIBMGA000632-PA|IPR001680|WD-40 repeat,
IPR008042|Retrotransposon, Pao, IPR011046|WD40-like
         (451 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.98 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 53  KLYAVGSNTKTLRICSYPKIEDVNLLETLGENENGNQVE--LYKPEEKTERVLGLIWKTE 110
           K  AVG +   +R    PK E   +L  + ++ +    E  +    E  +R+L  + +  
Sbjct: 127 KCIAVGMSRDAVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAH 186

Query: 111 KDVLTFDLNLTRIPPPLVEGK-TP 133
            D  T D    ++ P LV  + TP
Sbjct: 187 LD--TCDFTRDKVAPILVRARETP 208


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 54  LYAVGSNTKTLRICSYPKIEDVNLLE 79
           L+A+      LR+ S PKI+DVN+++
Sbjct: 441 LHAIRRGASILRV-SMPKIKDVNIID 465


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 185 RTKHHKGSIYCLAWSPAGDLLATGSNDKTVKLMAFNT 221
           R + H     CLA SPAG + +   N + V    ++T
Sbjct: 71  RQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDT 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,397
Number of Sequences: 429
Number of extensions: 6845
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 451
length of database: 140,377
effective HSP length: 60
effective length of query: 391
effective length of database: 114,637
effective search space: 44823067
effective search space used: 44823067
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)