GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000632-TA|BGIBMGA000632-PA|IPR001680|WD-40 repeat,
IPR008042|Retrotransposon, Pao, IPR011046|WD40-like
         (451 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    43   1e-05
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.79 
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    27   1.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   7.3  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 76  NLLETLGENENGNQVELYKPEEKTERVLGLIWKTEKDVLTFDLNLTRIPPPLVEGKTPTK 135
           ++L +  E +N  +V   K  E     LGL+W    D L   ++     P   E    TK
Sbjct: 908 HILPSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKIS----EPETCE--IYTK 961

Query: 136 REALKVVMSLFDPLGFVSPVTNRAKQLLQESINLFRDN 173
           R  ++ +  ++DPLG V  V  +AKQ +Q   +L ++N
Sbjct: 962 RSIIRTIAKIYDPLGIVDTVKAKAKQFMQRVWSLKKEN 999


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 9/39 (23%), Positives = 24/39 (61%)

Query: 124 PPPLVEGKTPTKREALKVVMSLFDPLGFVSPVTNRAKQL 162
           PPP ++ ++  ++ +L+V   +F P G +  + N ++++
Sbjct: 851 PPPFLDDRSLKRQRSLEVFQEVFGPKGSIERLRNPSQRV 889


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 263 DCKIYVTDCIIGKTFQALSGHSGHVLSLYNWGGAMFVSGSQDKTVRFWDLRTGGCVNIIS 322
           +C  Y T C   +    L+GH GH +   + G        +     F+    G C+N   
Sbjct: 343 NCNGYSTKCFFDRHLYNLTGHGGHCI---DCGANRDGPNCERCKENFFMREDGYCINCGC 399

Query: 323 PPAGQPS 329
            P G  S
Sbjct: 400 DPVGSRS 406


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 108 KTEKDVLTFDLNLTRIPPPLVEGKTPTKREALKVVMSLFDPLGF---VSPVTNRAKQLLQ 164
           KTE  +++   N T++   + + +  + R    + ++L D L +   V  VT RA+++  
Sbjct: 767 KTECVLISSTKNPTQVTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHVREVTTRARKIAD 826

Query: 165 ESINLFRDNSAP 176
               L R++S P
Sbjct: 827 AVTRLLRNHSGP 838


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,638
Number of Sequences: 2123
Number of extensions: 21420
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 4
length of query: 451
length of database: 516,269
effective HSP length: 66
effective length of query: 385
effective length of database: 376,151
effective search space: 144818135
effective search space used: 144818135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)